ENSDARG00000074275


Danio rerio

Features
Gene ID: ENSDARG00000074275
  
Biological name :limch1a
  
Synonyms : LIM and calponin homology domains 1a / limch1a
  
Possible biological names infered from orthology : LIM and calponin homology domains 1 / LIM and calponin homology domains-containing protein 1 / LIMCH1 / Q3UH68 / Q9UPQ0
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 18965750
Gene end: 19066327
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000120339
NCBI entrez gene - 561940     See in Manteia.
RefSeq - NM_001145577
RefSeq Peptide - NP_001139049
swissprot - B8A4X7
ZFIN ID - ZDB-GENE-090312-153
Ensembl - ENSDARG00000074275
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIMCH1ENSGALG00000014258Gallus gallus
 LIMCH1ENSG00000064042Homo sapiens
 Limch1ENSMUSG00000037736Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
limch1b / LIM and calponin homology domains 1b / Q9UPQ0* / LIMCH1* / Q3UH68* / LIM and calponin homology domains 1* / LIM and calponin homology domains-containing protein 1 *ENSDARG0000010377445
lmo7a / LIM domain 7a / LMO7* / Q8WWI1* / LIM domain 7* / Mus musculus LIM domain only 7 (Lmo7), transcript variant 2, mRNA.*ENSDARG0000000493027
lmo7b / LIM domain 7bENSDARG0000005353525


Protein motifs (from Interpro)
Interpro ID Name
 IPR001715  Calponin homology domain
 IPR001781  Zinc finger, LIM-type
 IPR001997  Calponin/LIMCH1
 IPR003096  Smooth muscle protein/calponin
 IPR029980  LIM and calponin homology domains-containing protein 1
 IPR031865  Domain of unknown function DUF4757


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031032 actomyosin structure organization IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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