ENSMUSG00000037736


Mus musculus

Features
Gene ID: ENSMUSG00000037736
  
Biological name :Limch1
  
Synonyms : LIM and calponin homology domains-containing protein 1 / Limch1 / Q3UH68
  
Possible biological names infered from orthology : LIM and calponin homology domains 1 / Q9UPQ0
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: C3.1
Gene start: 66745827
Gene end: 67057158
  
Corresponding Affymetrix probe sets: 10522217 (MoGene1.0st)   1435106_at (Mouse Genome 430 2.0 Array)   1435321_at (Mouse Genome 430 2.0 Array)   1440776_at (Mouse Genome 430 2.0 Array)   1453802_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000113544
Ensembl peptide - ENSMUSP00000112732
Ensembl peptide - ENSMUSP00000114681
Ensembl peptide - ENSMUSP00000144176
Ensembl peptide - ENSMUSP00000123337
Ensembl peptide - ENSMUSP00000118979
Ensembl peptide - ENSMUSP00000116126
Ensembl peptide - ENSMUSP00000043163
Ensembl peptide - ENSMUSP00000098723
Ensembl peptide - ENSMUSP00000112651
NCBI entrez gene - 77569     See in Manteia.
MGI - MGI:1924819
RefSeq - XM_011240795
RefSeq - NM_001001980
RefSeq - NM_001256122
RefSeq - XM_006504179
RefSeq - XM_006504180
RefSeq - XM_006504181
RefSeq - XM_006504182
RefSeq - XM_006504183
RefSeq - XM_006504185
RefSeq - XM_011240793
RefSeq - XM_011240794
RefSeq Peptide - NP_001243051
RefSeq Peptide - NP_001001980
swissprot - D3Z589
swissprot - D3YV55
swissprot - D3YU59
swissprot - F6W1Y9
swissprot - F6X3N8
swissprot - D3YU22
swissprot - Q3UH68
swissprot - A0A0J9YUH0
swissprot - D6RHT2
Ensembl - ENSMUSG00000037736
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 limch1aENSDARG00000074275Danio rerio
 limch1bENSDARG00000103774Danio rerio
 LIMCH1ENSGALG00000014258Gallus gallus
 LIMCH1ENSG00000064042Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Lmo7 / Mus musculus LIM domain only 7 (Lmo7), transcript variant 2, mRNA. / Q8WWI1* / LIM domain 7*ENSMUSG0000003306031


Protein motifs (from Interpro)
Interpro ID Name
 IPR001715  Calponin homology domain
 IPR001781  Zinc finger, LIM-type
 IPR001997  Calponin/LIMCH1
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR029980  LIM and calponin homology domains-containing protein 1
 IPR031865  Domain of unknown function DUF4757
 IPR036872  CH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 biological_processGO:0031032 actomyosin structure organization IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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