ENSDARG00000103774


Danio rerio

Features
Gene ID: ENSDARG00000103774
  
Biological name :limch1b
  
Synonyms : LIM and calponin homology domains 1b / limch1b
  
Possible biological names infered from orthology : LIM and calponin homology domains 1 / LIM and calponin homology domains-containing protein 1 / LIMCH1 / Q3UH68 / Q9UPQ0
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 16813816
Gene end: 17027395
  
Corresponding Affymetrix probe sets: Dr.10986.1.A1_at (Zebrafish Array)   Dr.17294.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134200
Ensembl peptide - ENSDARP00000139706
Ensembl peptide - ENSDARP00000137354
Ensembl peptide - ENSDARP00000134427
NCBI entrez gene - 557200     See in Manteia.
swissprot - A0A0R4ISI2
swissprot - A0A0R4IK50
swissprot - A0A0R4IJJ4
swissprot - A0A0J9YJF0
ZFIN ID - ZDB-GENE-030131-9210
Ensembl - ENSDARG00000103774
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIMCH1ENSGALG00000014258Gallus gallus
 LIMCH1ENSG00000064042Homo sapiens
 Limch1ENSMUSG00000037736Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
limch1a / LIM and calponin homology domains 1a / Q9UPQ0* / LIMCH1* / Q3UH68* / LIM and calponin homology domains 1* / LIM and calponin homology domains-containing protein 1 *ENSDARG0000007427545
lmo7a / LIM domain 7a / LMO7* / Q8WWI1* / LIM domain 7* / Mus musculus LIM domain only 7 (Lmo7), transcript variant 2, mRNA.*ENSDARG0000000493027
lmo7b / LIM domain 7bENSDARG0000005353524


Protein motifs (from Interpro)
Interpro ID Name
 IPR001715  Calponin homology domain
 IPR001781  Zinc finger, LIM-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR029980  LIM and calponin homology domains-containing protein 1
 IPR031865  Domain of unknown function DUF4757


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr