ENSDARG00000004930


Danio rerio

Features
Gene ID: ENSDARG00000004930
  
Biological name :lmo7a
  
Synonyms : LIM domain 7a / lmo7a
  
Possible biological names infered from orthology : LIM domain 7 / LMO7 / Mus musculus LIM domain only 7 (Lmo7), transcript variant 2, mRNA. / Q8WWI1
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 21893757
Gene end: 21970067
  
Corresponding Affymetrix probe sets: Dr.13956.1.S1_at (Zebrafish Array)   Dr.13956.2.A1_at (Zebrafish Array)   Dr.3121.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113411
Ensembl peptide - ENSDARP00000123670
Ensembl peptide - ENSDARP00000118407
Ensembl peptide - ENSDARP00000115609
Ensembl peptide - ENSDARP00000027005
Ensembl peptide - ENSDARP00000085215
NCBI entrez gene - 553341     See in Manteia.
RefSeq - NM_001128231
RefSeq Peptide - NP_001121703
swissprot - B0UYM5
swissprot - F1Q7Z5
swissprot - F1QJN0
swissprot - F1QL17
swissprot - E9QJM8
swissprot - B0UYM8
ZFIN ID - ZDB-GENE-030219-74
Ensembl - ENSDARG00000004930
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LMO7ENSGALG00000016920Gallus gallus
 LMO7ENSG00000136153Homo sapiens
 Lmo7ENSMUSG00000033060Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmo7b / LIM domain 7bENSDARG0000005353525
limch1a / LIM and calponin homology domains 1a / Q9UPQ0* / LIMCH1* / Q3UH68* / LIM and calponin homology domains 1* / LIM and calponin homology domains-containing protein 1 *ENSDARG0000007427515
limch1b / LIM and calponin homology domains 1b / Q9UPQ0* / LIMCH1* / Q3UH68* / LIM and calponin homology domains 1* / LIM and calponin homology domains-containing protein 1 *ENSDARG0000010377415


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001715  Calponin homology domain
 IPR001781  Zinc finger, LIM-type
 IPR029978  LIM domain only protein 7
 IPR031865  Domain of unknown function DUF4757


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0023051 regulation of signaling IEA
 biological_processGO:0030155 regulation of cell adhesion IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr