ENSDARG00000076303


Danio rerio

Features
Gene ID: ENSDARG00000076303
  
Biological name :usp11
  
Synonyms : ubiquitin specific peptidase 11 / usp11
  
Possible biological names infered from orthology : P51784 / Q99K46
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 8643901
Gene end: 8682933
  
Corresponding Affymetrix probe sets: Dr.15665.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113093
Ensembl peptide - ENSDARP00000116590
Ensembl peptide - ENSDARP00000070106
NCBI entrez gene - 568334     See in Manteia.
swissprot - B0UYJ2
swissprot - F1QPF4
swissprot - F1RBH7
ZFIN ID - ZDB-GENE-081104-421
Ensembl - ENSDARG00000076303
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP11ENSG00000102226Homo sapiens
 Usp11ENSMUSG00000031066Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp4 / ubiquitin specific peptidase 4 (proto-oncogene) / P35123* / Q13107* / ubiquitin specific peptidase 4*ENSDARG0000001477045
usp32 / ubiquitin specific peptidase 32 / USP6* / Q8NFA0* / P35125* / ubiquitin specific peptidase 6*ENSDARG0000006189529
usp19 / ubiquitin specific peptidase 19 / O94966* / Q3UJD6*ENSDARG0000000413226
usp43b / ubiquitin specific peptidase 43b / USP43* / Q70EL4* / Q8BUM9* / ubiquitin specific peptidase 43*ENSDARG0000008807220
usp43a / ubiquitin specific peptidase 43a / USP43* / Q70EL4* / Q8BUM9* / ubiquitin specific peptidase 43*ENSDARG0000010349419
usp31 / ubiquitin specific peptidase 31 / Q70CQ4*ENSDARG0000007401719


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR006615  Peptidase C19, ubiquitin-specific peptidase, DUSP domain
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028135  Ubiquitin-like domain, USP-type
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001115 trunk trunk bent , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000005481 nfkbiaa / nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a / Q9Z1E3* / NFKBIA* / P25963* / NFKB inhibitor alpha* / NF-kappa-B inhibitor alpha *  / complex
 ENSDARG00000007693 nfkbiab / nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b / Q9Z1E3* / NFKBIA* / P25963* / NFKB inhibitor alpha* / NF-kappa-B inhibitor alpha *  / complex






 

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