ENSDARG00000076733


Danio rerio

Features
Gene ID: ENSDARG00000076733
  
Biological name :bard1
  
Synonyms : bard1 / BRCA1 associated RING domain 1
  
Possible biological names infered from orthology : BRCA1-associated RING domain protein 1 / O70445 / Q99728
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 40617215
Gene end: 40683768
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114592
Ensembl peptide - ENSDARP00000120153
Ensembl peptide - ENSDARP00000146363
NCBI entrez gene - 100147913     See in Manteia.
swissprot - B0UZD0
swissprot - B0UZD1
ZFIN ID - ZDB-GENE-030131-5883
Ensembl - ENSDARG00000076733
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BARD1ENSGALG00000003484Gallus gallus
 BARD1ENSG00000138376Homo sapiens
 Bard1ENSMUSG00000026196Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tonsl / tonsoku-like, DNA repair protein / Q96HA7*ENSDARG0000007129416
ankrd11 / ankyrin repeat domain 11 / Q6UB99*ENSDARG0000005188614
ankrd12 / ankyrin repeat domain 12 / Q6UB98*ENSDARG0000005241914
bcorl1 / BCL6 corepressor-like 1 / A2AQH4* / Q5H9F3* / BCL-6 corepressor-like protein 1 *ENSDARG0000007791213
bcor / BCL6 corepressor / Q6W2J9* / Q8CGN4*ENSDARG0000001779811
slf1 / SMC5-SMC6 complex localization factor 1 / Q8R3P9* / Q9BQI6*ENSDARG000001021189
ankrd31 / ankyrin repeat domain 31 / Q8N7Z5*ENSDARG000000527313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR002110  Ankyrin repeat
 IPR020683  Ankyrin repeat-containing domain
 IPR033097  BRCA1-associated RING domain protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 cellular_componentGO:0031436 BRCA1-BARD1 complex IEA


Pathways (from Reactome)
Pathway description
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
UCH proteinases
Metalloprotease DUBs
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr