ENSDARG00000017798


Danio rerio

Features
Gene ID: ENSDARG00000017798
  
Biological name :bcor
  
Synonyms : BCL6 corepressor / bcor
  
Possible biological names infered from orthology : Q6W2J9 / Q8CGN4
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 11144153
Gene end: 11200846
  
Corresponding Affymetrix probe sets: Dr.16163.1.S1_at (Zebrafish Array)   NM_205626_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000047441
Ensembl peptide - ENSDARP00000092882
Ensembl peptide - ENSDARP00000145135
NCBI entrez gene - 402921     See in Manteia.
RefSeq - NM_205626
RefSeq - XM_005173943
RefSeq Peptide - NP_991189
swissprot - Q6W2J8
swissprot - F1RCL8
ZFIN ID - ZDB-GENE-040408-1
Ensembl - ENSDARG00000017798
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043274Gallus gallus
 BCORENSGALG00000016245Gallus gallus
 BCORENSG00000183337Homo sapiens
 BcorENSMUSG00000040363Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bcorl1 / BCL6 corepressor-like 1 / A2AQH4* / Q5H9F3* / BCL-6 corepressor-like protein 1 *ENSDARG0000007791217
tonsl / tonsoku-like, DNA repair protein / Q96HA7*ENSDARG000000712947
ankrd11 / ankyrin repeat domain 11 / Q6UB99*ENSDARG000000518866
slf1 / SMC5-SMC6 complex localization factor 1 / Q8R3P9* / Q9BQI6*ENSDARG000001021185
ankrd12 / ankyrin repeat domain 12 / Q6UB98*ENSDARG000000524195
bard1 / BRCA1 associated RING domain 1 / O70445* / Q99728* / BRCA1-associated RING domain protein 1 *ENSDARG000000767334
ankrd31 / ankyrin repeat domain 31 / Q8N7Z5*ENSDARG000000527311


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR020683  Ankyrin repeat-containing domain
 IPR031628  BCL-6 corepressor, non-ankyrin-repeat domain
 IPR032365  BCL-6 corepressor, PCGF1 binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0021915 neural tube development IMP
 biological_processGO:0043010 camera-type eye development IMP
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 biological_processGO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000109 forebrain forebrain retinal pigmented epithelium mislocalized adaxially , abnormal
Show

 ZFA:0000114 heart heart edematous , abnormal
Show

 ZFA:0000152 retina retina perforate , abnormal
retina ventral region mislocalized adaxially , abnormal
retina intrinsic apoptotic signaling pathway by p53 class mediator increased occurrence , abnormal
retina cell apoptotic , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin absent , abnormal
Show

 ZFA:0001284 optic fissure optic fissure open , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr