ENSDARG00000077822


Danio rerio

Features
Gene ID: ENSDARG00000077822
  
Biological name :si:dkey-6i22.5
  
Synonyms : si:dkey-6i22.5
  
Possible biological names infered from orthology : PMF1 / PMF1-BGLAP / PMF1-BGLAP readthrough / polyamine modulated factor 1 / Q6P1K2 / Q9CPV5
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 22109241
Gene end: 22118055
  
Corresponding Affymetrix probe sets: Dr.17935.1.S1_at (Zebrafish Array)   XM_687584_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000103590
Ensembl peptide - ENSDARP00000145682
NCBI entrez gene - 564240     See in Manteia.
RefSeq - XM_687584
RefSeq - XM_021481151
swissprot - F1Q903
ZFIN ID - ZDB-GENE-050506-32
Ensembl - ENSDARG00000077822
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PMF1ENSG00000160783Homo sapiens
 PMF1-BGLAPENSG00000260238Homo sapiens
 Pmf1ENSMUSG00000028066Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007128  Nuclear MIS12/MIND complex subunit PMF1/Nnf1


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
RHO GTPases Activate Formins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000071694 ndc80 / Q6DRJ7 / NDC80 kinetochore complex component / O14777* / Q9D0F1* / Kinetochore *  / complex
 ENSDARG00000034624 nuf2 / Q7ZW63 / NUF2, NDC80 kinetochore complex component, homolog / Q99P69* / Q9BZD4* / NUF2, NDC80 kinetochore complex component* / Mus musculus NUF2, NDC80 kinetochore complex component ...  / complex
 ENSDARG00000093622 spc24 / Q503N2 / SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) / Q9D083* / Q8NBT2* / Kinetochore protein Spc24 * / SPC24, NDC80 kinetochore complex component*  / complex
 ENSDARG00000024471 nsl1 / NSL1, MIS12 kinetochore complex component / Q96IY1*  / complex
 ENSDARG00000078433 spc25 / SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) / Q9HBM1* / Q3UA16* / Kinetochore protein Spc25 * / SPC25, NDC80 kinetochore complex component*  / complex
 ENSDARG00000089922 dsn1 / DSN1 homolog, MIS12 kinetochore complex component / Q9H410*  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr