ENSDARG00000077948


Danio rerio

Features
Gene ID: ENSDARG00000077948
  
Biological name :usp54a
  
Synonyms : ubiquitin specific peptidase 54a / usp54a
  
Possible biological names infered from orthology : Q70EL1 / Q8BL06 / ubiquitin specific peptidase 54 / USP54
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 22280983
Gene end: 22374036
  
Corresponding Affymetrix probe sets: Dr.4683.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000149798
Ensembl peptide - ENSDARP00000157172
Ensembl peptide - ENSDARP00000155154
Ensembl peptide - ENSDARP00000102605
Ensembl peptide - ENSDARP00000142440
Ensembl peptide - ENSDARP00000142525
NCBI entrez gene - 563912     See in Manteia.
RefSeq - XM_021480610
RefSeq - XM_021480611
RefSeq - NM_001327875
RefSeq Peptide - NP_001314804
swissprot - E7F383
swissprot - A0A140LGR1
ZFIN ID - ZDB-GENE-090828-2
Ensembl - ENSDARG00000077948
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP54ENSGALG00000005232Gallus gallus
 USP54ENSG00000166348Homo sapiens
 Usp54ENSMUSG00000034235Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp54b / ubiquitin specific peptidase 54b / USP54* / Q70EL1* / Q8BL06* / ubiquitin specific peptidase 54*ENSDARG0000007774937
USP53 (1 of many) / ubiquitin specific peptidase 53 / USP53* / Q70EK8*ENSDARG0000007861518
usp53b / ubiquitin specific peptidase 53b / USP53* / P15975* / Q70EK8* / ubiquitin specific peptidase 53*ENSDARG0000007649915


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr