ENSDARG00000078050


Danio rerio

Features
Gene ID: ENSDARG00000078050
  
Biological name :phf19
  
Synonyms : PHD finger protein 19 / phf19
  
Possible biological names infered from orthology : Q5T6S3 / Q9CXG9
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 12340247
Gene end: 12403077
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000118843
NCBI entrez gene - 560078     See in Manteia.
RefSeq - NM_001128526
RefSeq - XM_005166852
RefSeq Peptide - NP_001121998
swissprot - B0UXK0
ZFIN ID - ZDB-GENE-081105-128
Ensembl - ENSDARG00000078050
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PHF19ENSGALG00000001595Gallus gallus
 PHF19ENSG00000119403Homo sapiens
 Phf19ENSMUSG00000026873Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mtf2 / metal response element binding transcription factor 2 / Q02395* / Q9Y483*ENSDARG0000000559045
phf1 / PHD finger protein 1 / O43189* / Q9Z1B8*ENSDARG0000005743928


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR002999  Tudor domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR025894  Polycomb-like MTF2 factor 2, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000098924 suz12b / B0R1D5 / SUZ12 polycomb repressive complex 2b subunit / SUZ12* / Q80U70* / Q15022* / Polycomb protein Suz12 * / SUZ12 polycomb repressive complex 2 subunit*  / complex
 ENSDARG00000099640 eed / Q566T0 / embryonic ectoderm development / O75530* / Q921E6* / Polycomb protein EED *  / complex






 

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contact: otassy@igbmc.fr