ENSDARG00000078428


Danio rerio

Features
Gene ID: ENSDARG00000078428
  
Biological name :si:ch211-256e16.4
  
Synonyms : si:ch211-256e16.4
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 58119571
Gene end: 58131524
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000100900
swissprot - E7F3Z9
ZFIN ID - ZDB-GENE-131121-267
Ensembl - ENSDARG00000078428
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000026015Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-256e16.6ENSDARG0000007960347
si:ch211-256e16.10ENSDARG0000009756633
si:ch211-256e16.7ENSDARG0000009682131
FO818743.1ENSDARG0000010267526
htr3a / 5-hydroxytryptamine (serotonin) receptor 3A / P46098* / 5-hydroxytryptamine receptor 3A*ENSDARG0000008921224
CR847523.1ENSDARG0000010811823
si:dkey-49c17.4ENSDARG0000007482421
chrna10a / cholinergic receptor, nicotinic, alpha 10aENSDARG0000001111321
htr3b / 5-hydroxytryptamine (serotonin) receptor 3B / O95264* / Q9JHJ5* / 5-hydroxytryptamine receptor 3B*ENSDARG0000006174921
chrna9 / cholinergic receptor, nicotinic, alpha 9 / Q9UGM1* / cholinergic receptor nicotinic alpha 9 subunit* / cholinergic receptor, nicotinic, alpha polypeptide 9*ENSDARG0000005468021
chrne / cholinergic receptor, nicotinic, epsilon / P20782* / Q04844* / cholinergic receptor nicotinic epsilon subunit* / cholinergic receptor, nicotinic, epsilon polypeptide*ENSDARG0000003430720
si:ch73-380n15.2ENSDARG0000008722420
chrng / cholinergic receptor, nicotinic, gamma / P07510* / cholinergic receptor nicotinic gamma subunit*ENSDARG0000008664720
LO018568.1 / CHRNA9* / Q9UGM1* / cholinergic receptor nicotinic alpha 9 subunit*ENSDARG0000009918120
FO907089.1 / Q494W8* / CHRNA7* / P36544* / CHRFAM7A* / cholinergic receptor nicotinic alpha 7 subunit* / CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion*ENSDARG0000010152220
chrnd / cholinergic receptor, nicotinic, delta (muscle) / P02716* / Q07001* / cholinergic receptor nicotinic delta subunit* / cholinergic receptor, nicotinic, delta polypeptide*ENSDARG0000001934219
chrnb1l / cholinergic receptor, nicotinic, beta 1 (muscle) like / CHRNB1* / P09690* / P11230* / cholinergic receptor nicotinic beta 1 subunit* / cholinergic receptor, nicotinic, beta polype...ENSDARG0000002253219
si:ch211-39a7.1ENSDARG0000003742718
chrnb1 / cholinergic receptor, nicotinic, beta 1 (muscle) / P09690* / P11230* / cholinergic receptor nicotinic beta 1 subunit* / cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)*ENSDARG0000006966018
chrna7 / cholinergic receptor, nicotinic, alpha 7 (neuronal) / Q494W8* / P36544* / P49582* / CHRFAM7A* / cholinergic receptor nicotinic alpha 7 subunit* / CHRNA7 (exons 5-10) and FAM7A (exo...ENSDARG0000010170218


Protein motifs (from Interpro)
Interpro ID Name
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR018000  Neurotransmitter-gated ion-channel, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0022850 serotonin-gated cation-selective channel activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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