ENSDARG00000078741


Danio rerio

Features
Gene ID: ENSDARG00000078741
  
Biological name :zgc:172136
  
Synonyms : zgc:172136
  
Possible biological names infered from orthology : FERM domain containing 1 / FRMD1 / Q8N878
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 39236141
Gene end: 39271505
  
Corresponding Affymetrix probe sets: Dr.17295.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000098019
NCBI entrez gene - 566376     See in Manteia.
RefSeq - NM_001111187
RefSeq - XM_009307480
RefSeq Peptide - NP_001104657
swissprot - A9JRC9
ZFIN ID - ZDB-GENE-030131-1008
Ensembl - ENSDARG00000078741
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FRMD1ENSGALG00000011296Gallus gallus
 FRMD1ENSG00000153303Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
frmd6 / FERM domain containing 6 / Q8C0V9* / Q96NE9* / FERM domain-containing protein 6 *ENSDARG0000000233243
si:ch73-205h11.1 / FRMD1* / Q8N878* / FERM domain containing 1*ENSDARG0000009675730
ptpn13 / protein tyrosine phosphatase, non-receptor type 13 / Q12923*ENSDARG0000010369918
frmpd2 / FERM and PDZ domain containing 2 / Q68DX3*ENSDARG0000007411917
ptpn21 / protein tyrosine phosphatase, non-receptor type 21 / Q16825*ENSDARG0000006224816
ptpn20 / protein tyrosine phosphatase, non-receptor type 20ENSDARG000000754594
CR931802.3ENSDARG000001062450


Protein motifs (from Interpro)
Interpro ID Name
 IPR000299  FERM domain
 IPR011993  PH-like domain superfamily
 IPR014352  FERM/acyl-CoA-binding protein superfamily
 IPR018979  FERM, N-terminal
 IPR018980  FERM, C-terminal PH-like domain
 IPR019748  FERM central domain
 IPR019749  Band 4.1 domain
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005856 cytoskeleton IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr