ENSDARG00000103699


Danio rerio

Features
Gene ID: ENSDARG00000103699
  
Biological name :ptpn13
  
Synonyms : protein tyrosine phosphatase, non-receptor type 13 / ptpn13
  
Possible biological names infered from orthology : Q12923
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 9387264
Gene end: 9562272
  
Corresponding Affymetrix probe sets: Dr.19015.1.A1_at (Zebrafish Array)   Dr.1964.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000135765
Ensembl peptide - ENSDARP00000139515
Ensembl peptide - ENSDARP00000139064
Ensembl peptide - ENSDARP00000136911
Ensembl peptide - ENSDARP00000136300
NCBI entrez gene - 560883     See in Manteia.
RefSeq - NM_001089543
RefSeq - XM_005161466
RefSeq - XM_009295162
RefSeq Peptide - NP_001083012
swissprot - A0A0J9YJD7
swissprot - A4QNY2
swissprot - A0A0R4IWH3
swissprot - A0A0R4IPR0
swissprot - A0A0R4IMR5
ZFIN ID - ZDB-GENE-070410-72
Ensembl - ENSDARG00000103699
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTPN13ENSGALG00000011078Gallus gallus
 PTPN13ENSG00000163629Homo sapiens
 Ptpn13ENSMUSG00000034573Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
frmpd2 / FERM and PDZ domain containing 2 / Q68DX3*ENSDARG0000007411923
ptpn21 / protein tyrosine phosphatase, non-receptor type 21 / Q16825*ENSDARG0000006224810
zgc:172136 / FRMD1* / Q8N878* / FERM domain containing 1*ENSDARG000000787418
frmd6 / FERM domain containing 6 / Q8C0V9* / Q96NE9* / FERM domain-containing protein 6 *ENSDARG000000023328
si:ch73-205h11.1 / FRMD1* / Q8N878* / FERM domain containing 1*ENSDARG000000967577
CR931802.3ENSDARG000001062456
ptpn20 / protein tyrosine phosphatase, non-receptor type 20ENSDARG000000754592


Protein motifs (from Interpro)
Interpro ID Name
 IPR000242  PTP type protein phosphatase
 IPR000299  FERM domain
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR001478  PDZ domain
 IPR003100  PAZ domain
 IPR003595  Protein-tyrosine phosphatase, catalytic
 IPR011019  KIND domain
 IPR011993  PH-like domain superfamily
 IPR012153  Tyrosine-protein phosphatase non-receptor type 13
 IPR014352  FERM/acyl-CoA-binding protein superfamily
 IPR018979  FERM, N-terminal
 IPR018980  FERM, C-terminal PH-like domain
 IPR019747  FERM conserved site
 IPR019748  FERM central domain
 IPR019749  Band 4.1 domain
 IPR029021  Protein-tyrosine phosphatase-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 biological_processGO:0070830 bicellular tight junction assembly IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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