ENSDARG00000087327


Danio rerio

Features
Gene ID: ENSDARG00000087327
  
Biological name :cbx8a
  
Synonyms : cbx8a / chromobox homolog 8a (Pc class homolog, Drosophila)
  
Possible biological names infered from orthology : CBX8 / chromobox 8 / Chromobox protein homolog 8 / Q9HC52 / Q9QXV1
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 18567560
Gene end: 18571115
  
Corresponding Affymetrix probe sets: Dr.13256.1.A1_at (Zebrafish Array)   Dr.20034.1.S1_at (Zebrafish Array)   NM_205616_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000108616
NCBI entrez gene - 100150672     See in Manteia.
RefSeq - NM_205616
RefSeq Peptide - NP_991179
swissprot - Q6TH37
ZFIN ID - ZDB-GENE-040405-1
Ensembl - ENSDARG00000087327
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CBX8ENSGALG00000026548Gallus gallus
 CBX8ENSG00000141570Homo sapiens
 Cbx8ENSMUSG00000025578Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbx8b / chromobox homolog 8b / CBX8* / Q9QXV1* / Q9HC52* / chromobox 8* / Chromobox protein homolog 8 *ENSDARG0000009877152
cbx6b / chromobox homolog 6b / CBX6* / Q9DBY5* / O95503* / chromobox 6* / Chromobox protein homolog 6 *ENSDARG0000009754331
cbx6a / chromobox homolog 6a / CBX6* / Q9DBY5* / O95503* / chromobox 6* / Chromobox protein homolog 6 *ENSDARG0000007105125
cbx4 / chromobox homolog 4 (Pc class homolog, Drosophila) / O55187* / O00257* / chromobox 4* / E3 SUMO-protein ligase CBX4 *ENSDARG0000009944124
cbx7a / chromobox homolog 7a / CBX7* / Q8VDS3* / O95931* / chromobox 7* / Chromobox protein homolog 7 *ENSDARG0000003802523
cbx2 / chromobox homolog 2 (Drosophila Pc class) / Q14781* / P30658* / chromobox 2* / Chromobox protein homolog 2 *ENSDARG0000004493823
cbx7b / chromobox homolog 7b / CBX7* / Q8VDS3* / O95931* / chromobox 7* / Chromobox protein homolog 7 *ENSDARG0000008718121


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR033773  CBX family C-terminal motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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