ENSDARG00000099441


Danio rerio

Features
Gene ID: ENSDARG00000099441
  
Biological name :cbx4
  
Synonyms : cbx4 / chromobox homolog 4 (Pc class homolog, Drosophila)
  
Possible biological names infered from orthology : chromobox 4 / E3 SUMO-protein ligase CBX4 / O00257 / O55187
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 18555899
Gene end: 18564030
  
Corresponding Affymetrix probe sets: Dr.20970.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000132706
Ensembl peptide - ENSDARP00000137702
swissprot - A0A0R4IP75
swissprot - A1L217
swissprot - B7ZUU4
ZFIN ID - ZDB-GENE-040329-2
Ensembl - ENSDARG00000099441
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CBX4ENSGALG00000035911Gallus gallus
 CBX4ENSG00000141582Homo sapiens
 Cbx4ENSMUSG00000039989Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbx6b / chromobox homolog 6b / CBX6* / Q9DBY5* / O95503* / chromobox 6* / Chromobox protein homolog 6 *ENSDARG0000009754320
cbx8b / chromobox homolog 8b / CBX8* / Q9QXV1* / Q9HC52* / chromobox 8* / Chromobox protein homolog 8 *ENSDARG0000009877118
cbx2 / chromobox homolog 2 (Drosophila Pc class) / Q14781* / P30658* / chromobox 2* / Chromobox protein homolog 2 *ENSDARG0000004493818
cbx8a / chromobox homolog 8a (Pc class homolog, Drosophila) / CBX8* / Q9QXV1* / Q9HC52* / chromobox 8* / Chromobox protein homolog 8 *ENSDARG0000008732717
cbx6a / chromobox homolog 6a / CBX6* / Q9DBY5* / O95503* / chromobox 6* / Chromobox protein homolog 6 *ENSDARG0000007105116
cbx7a / chromobox homolog 7a / CBX7* / Q8VDS3* / O95931* / chromobox 7* / Chromobox protein homolog 7 *ENSDARG0000003802515
cbx7b / chromobox homolog 7b / CBX7* / Q8VDS3* / O95931* / chromobox 7* / Chromobox protein homolog 7 *ENSDARG0000008718114


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR033773  CBX family C-terminal motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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