ENSDARG00000088290


Danio rerio

Features
Gene ID: ENSDARG00000088290
  
Biological name :foxj1b
  
Synonyms : F1R8Z9 / forkhead box J1b / foxj1b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 20149305
Gene end: 20157014
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000107064
Ensembl peptide - ENSDARP00000127381
Ensembl peptide - ENSDARP00000145705
NCBI entrez gene - 494105     See in Manteia.
RefSeq - NM_001008648
RefSeq Peptide - NP_001008648
swissprot - F1R8Z9
swissprot - U3JAW2
ZFIN ID - ZDB-GENE-041212-76
Ensembl - ENSDARG00000088290
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
F1QDF8 / foxj1a / forkhead box J1a / FOXJ1* / Q92949* / forkhead box J1*ENSDARG0000010191938
foxj3 / forkhead box J3 / Q8BUR3* / Q9UPW0* / Forkhead box protein J3 *ENSDARG0000007577419
si:ch211-262e15.1 / FOXK2* / Q01167* / Q3UCQ1* / forkhead box K2* / Forkhead box protein K2 *ENSDARG0000001160918
foxk1 / forkhead box K1 / P42128* / P85037* / Forkhead box protein K1 *ENSDARG0000003787217
foxk2 / forkhead box K2 / Q01167*ENSDARG0000003058317
foxn3 / forkhead box N3 / O00409* / Q499D0* / Forkhead box protein N3 *ENSDARG0000001283317
foxn2b / forkhead box N2b / FOXN2* / P32314* / forkhead box N2* / Mus musculus forkhead box N2 (Foxn2), transcript variant 3, mRNA.*ENSDARG0000004510516
ches1 / checkpoint suppressor 1ENSDARG0000004355316
foxj2 / forkhead box J2 / Q9ES18* / Q9P0K8* / Forkhead box protein J2 *ENSDARG0000005768015
foxn4 / A2BGM5 / forkhead box N4 / Q96NZ1* / Q8K3Q3* / Forkhead box protein N4 *ENSDARG0000001059114
si:ch211-145o7.3ENSDARG0000006154814
forkhead box N2 / FOXN2 (1 of many) / FOXN2* / P32314*ENSDARG0000005557414
foxn1 / forkhead box N1 / O15353* / Q61575* / Forkhead box protein N1 *ENSDARG0000001187913


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0003146 heart jogging IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0060088 auditory receptor cell stereocilium organization IMP
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle motile cilium decreased amount , abnormal
Show

 ZFA:0000054 pericardium pericardium dilated , abnormal
Show

 ZFA:0000114 heart heart right side of whole organism anterior-posterior axis, abnormal
heart centered , abnormal
Show

 ZFA:0000115 heart rudiment heart rudiment bilateral , abnormal
heart rudiment right side of whole organism anterior-posterior axis, abnormal
Show

 ZFA:0000123 liver liver bilateral , abnormal
liver right side of whole organism anterior-posterior axis, abnormal
Show

 ZFA:0000155 somite somite loose , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
Show

 ZFA:0001617 otolith otolith deformed , abnormal
Show

 ZFA:0009121 auditory receptor cell auditory receptor cell kinocilium decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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