ENSDARG00000011879


Danio rerio

Features
Gene ID: ENSDARG00000011879
  
Biological name :foxn1
  
Synonyms : forkhead box N1 / foxn1
  
Possible biological names infered from orthology : Forkhead box protein N1 / O15353 / Q61575
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 28129683
Gene end: 28161224
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000005855
Ensembl peptide - ENSDARP00000143366
NCBI entrez gene - 266748     See in Manteia.
swissprot - F1R9K2
ZFIN ID - ZDB-GENE-021008-1
Ensembl - ENSDARG00000011879
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FOXN1ENSGALG00000043868Gallus gallus
 FOXN1ENSG00000109101Homo sapiens
 Foxn1ENSMUSG00000002057Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
foxn4 / A2BGM5 / forkhead box N4 / Q96NZ1* / Q8K3Q3* / Forkhead box protein N4 *ENSDARG0000001059127
foxj3 / forkhead box J3 / Q8BUR3* / Q9UPW0* / Forkhead box protein J3 *ENSDARG0000007577414
foxn3 / forkhead box N3 / O00409* / Q499D0* / Forkhead box protein N3 *ENSDARG0000001283313
si:ch211-262e15.1 / FOXK2* / Q01167* / Q3UCQ1* / forkhead box K2* / Forkhead box protein K2 *ENSDARG0000001160913
foxk2 / forkhead box K2 / Q01167*ENSDARG0000003058313
F1QDF8 / foxj1a / forkhead box J1a / FOXJ1* / Q92949* / forkhead box J1*ENSDARG0000010191913
foxk1 / forkhead box K1 / P42128* / P85037* / Forkhead box protein K1 *ENSDARG0000003787213
ches1 / checkpoint suppressor 1ENSDARG0000004355313
foxn2b / forkhead box N2b / FOXN2* / P32314* / forkhead box N2* / Mus musculus forkhead box N2 (Foxn2), transcript variant 3, mRNA.*ENSDARG0000004510513
forkhead box N2 / FOXN2 (1 of many) / FOXN2* / P32314*ENSDARG0000005557411
foxj2 / forkhead box J2 / Q9ES18* / Q9P0K8* / Forkhead box protein J2 *ENSDARG0000005768011
si:ch211-145o7.3ENSDARG0000006154810
F1R8Z9 / foxj1b / forkhead box J1bENSDARG0000008829010


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR030456  Fork head domain conserved site 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0009653 anatomical structure morphogenesis IBA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0048538 thymus development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IPI
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001078 thymus thymus decreased size , abnormal
thymus cell proliferation decreased occurrence , abnormal
thymus epithelial cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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