ENSDARG00000093022


Danio rerio

Features
Gene ID: ENSDARG00000093022
  
Biological name :selenoh
  
Synonyms : Q803H4 / selenoh / selenoprotein H
  
Possible biological names infered from orthology : H3.Y / histone cluster 2, H3c pseudogene
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 7315625
Gene end: 7317444
  
Corresponding Affymetrix probe sets: Dr.361.1.S1_at (Zebrafish Array)   NM_178133_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115662
Ensembl peptide - ENSDARP00000122778
Ensembl peptide - ENSDARP00000153106
NCBI entrez gene - 100302659     See in Manteia.
NCBI entrez gene - 347743     See in Manteia.
RefSeq - NM_001164240
RefSeq - NM_178133
RefSeq Peptide - NP_001157712
RefSeq Peptide - NP_835234
swissprot - Q803H4
swissprot - F1Q7W2
ZFIN ID - ZDB-GENE-030411-2
Ensembl - ENSDARG00000093022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H3F3CENSGALG00000020078Gallus gallus
 H3.YENSG00000269466Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FQ312024.1ENSDARG0000011437050
Q4QRF4 / CU457819.3 / Histone H3.2 / Q71DI3* / HIST2H3C* / histone cluster 2 H3 family member c*ENSDARG0000010541850
Q4QRF4 / FP325123.1 / Histone H3.2 ENSDARG0000010535950
Q4QRF4 / hist2h3c / histone cluster 2, H3cENSDARG0000009415450
Q4QRF4 / CU457819.4 / Histone H3.2 ENSDARG0000010545950
CR762436.2 / Q71DI3* / HIST2H3D* / histone cluster 2 H3 family member d*ENSDARG0000011296750
Q4QRF4 / CU459186.2 / Histone H3.2 ENSDARG0000010172050
CR354435.5 / P84228* / Hist2h3c2* / Histone H3.2 *ENSDARG0000011416950
CU302436.5 / P84228* / Hist1h3d* / Hist1h3f* / Histone H3.2 *ENSDARG0000011450050
CR762436.1 / P84228* / Hist2h3c1* / Histone H3.2 *ENSDARG0000011237550
Q4QRF4 / CU459186.3 / Histone H3.2 ENSDARG0000010381950
Q4QRF4 / FP325123.2 / Histone H3.2 / P04908* / P84228* / Hist1h3e* / HIST1H2AB* / HIST1H2AE* / histone cluster 1 H2A family member e* / histone cluster 1 H2A family member b*ENSDARG0000010548450
si:dkey-23a13.21ENSDARG0000010550850
Q4QRF4 / CU457819.2 / Histone H3.2 ENSDARG0000010537450
Q4QRF4 / CU459186.1 / Histone H3.2 ENSDARG0000009897050
Q4QRF4 / zgc:113983ENSDARG0000006894150
HIST2H3C / zgc:173552 / Q71DI3* / histone cluster 2 H3 family member c*ENSDARG0000011564450
si:dkey-108k21.24ENSDARG0000011264750
zgc:173552ENSDARG0000005173749
zgc:173552ENSDARG0000011213149


Protein motifs (from Interpro)
Interpro ID Name
 IPR000164  Histone H3/CENP-A
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold
 IPR011893  Selenoprotein, Rdx-type
 IPR012336  Thioredoxin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006334 nucleosome assembly IBA
 biological_processGO:0031016 pancreas development IMP
 biological_processGO:0045454 cell redox homeostasis IMP
 biological_processGO:0048513 animal organ development IMP
 biological_processGO:0048565 digestive tract development IMP
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0000777 condensed chromosome kinetochore IEA
 cellular_componentGO:0000786 nucleosome IBA
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0031492 nucleosomal DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000076 swim bladder swim bladder uninflated , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
gut decreased size , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
liver decreased size , abnormal
liver decreased amount , abnormal
Show

 ZFA:0000140 pancreas pancreas decreased size , abnormal
pancreas decreased amount , abnormal
pancreas absent , abnormal
Show

 ZFA:0001094 whole organism whole organism increased amount , abnormal
whole organism decreased amount , abnormal
whole organism cell cycle process quality , abnormal
whole organism cell redox homeostasis disrupted , abnormal
whole organism dead , abnormal
whole organism decreased life span , abnormal
whole organism necrotic , abnormal
whole organism edematous , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head absent , abnormal
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 ZFA:0001115 trunk trunk curved , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
Show

 ZFA:0001338 intestine intestine decreased amount , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0009111 hepatocyte hepatocyte apoptotic , abnormal
hepatocyte ballooning , abnormal
Show

 ZFA:0009248 neuron neuron decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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