ENSDARG00000098852


Danio rerio

Features
Gene ID: ENSDARG00000098852
  
Biological name :smdt1b
  
Synonyms : single-pass membrane protein with aspartate-rich tail 1b / smdt1b
  
Possible biological names infered from orthology : Q9DB10 / Q9H4I9 / single-pass membrane protein with aspartate rich tail 1 / SMDT1
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 54062510
Gene end: 54063520
  
Corresponding Affymetrix probe sets: Dr.17108.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134360
NCBI entrez gene - 100000862     See in Manteia.
RefSeq - NM_001326522
RefSeq Peptide - NP_001313451
swissprot - A0A0J9YJ98
ZFIN ID - ZDB-GENE-141212-9
Ensembl - ENSDARG00000098852
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMDT1ENSGALG00000011897Gallus gallus
 SMDT1ENSG00000183172Homo sapiens
 Smdt1ENSMUSG00000022452Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smdt1a / single-pass membrane protein with aspartate-rich tail 1a / SMDT1* / Q9DB10* / Q9H4I9* / single-pass membrane protein with aspartate rich tail 1*ENSDARG0000009582649


Protein motifs (from Interpro)
Interpro ID Name
 IPR018782  Essential MCU regulator, mitochondrial


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0036444 calcium import into the mitochondrion IEA
 biological_processGO:0051560 mitochondrial calcium ion homeostasis IEA
 cellular_componentGO:1990246 uniplex complex IEA


Pathways (from Reactome)
Pathway description
Mitochondrial calcium ion transport
Processing of SMDT1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000017728 phb2b / prohibitin 2b / PHB2* / O35129* / Q99623* / prohibitin 2*  / complex / reaction
 ENSDARG00000057414 phb / prohibitin / P35232* / P67778*  / reaction / complex
 ENSDARG00000045297 phb2a / prohibitin 2a / PHB2* / Q99623* / prohibitin 2*  / reaction / complex
 ENSDARG00000069671 maip1 / matrix AAA peptidase interacting protein 1 / Q8BHE8* / Q8WWC4* / m-AAA protease-interacting protein 1, mitochondrial *  / complex / reaction
 ENSDARG00000062272 afg3l2 / AFG3-like AAA ATPase 2 / Q9Y4W6* / AFG3 like matrix AAA peptidase subunit 2*  / reaction / complex
 ENSDARG00000068187 spg7 / spastic paraplegia 7 / Q9UQ90* / Q3ULF4* / Paraplegin * / SPG7, paraplegin matrix AAA peptidase subunit*  / complex / reaction






 

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