ENSDARG00000099274


Danio rerio

Features
Gene ID: ENSDARG00000099274
  
Biological name :atxn3
  
Synonyms : ataxin 3 / atxn3
  
Possible biological names infered from orthology : ataxin 3 like / ATXN3L / P54252 / Q9CVD2 / Q9H3M9
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 53284040
Gene end: 53289749
  
Corresponding Affymetrix probe sets: Dr.13374.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000137828
NCBI entrez gene - 394079     See in Manteia.
swissprot - A0A0R4ITP2
ZFIN ID - ZDB-GENE-040426-983
Ensembl - ENSDARG00000099274
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATXN3ENSGALG00000010766Gallus gallus
 ATXN3ENSG00000066427Homo sapiens
 ATXN3LENSG00000123594Homo sapiens
 Atxn3ENSMUSG00000021189Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003903  Ubiquitin interacting motif
 IPR006155  Josephin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA


Pathways (from Reactome)
Pathway description
Josephin domain DUBs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region malformed , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020008 vcp / Q7ZU99 / valosin containing protein / P55072* / Q01853*  / complex / reaction
 ENSDARG00000021550 rad23b / RAD23 homolog B, nucleotide excision repair protein / P54727*  / reaction / complex






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr