ENSG00000066427


Homo sapiens

Features
Gene ID: ENSG00000066427
  
Biological name :ATXN3
  
Synonyms : ataxin 3 / ATXN3 / P54252
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q32.12
Gene start: 92044496
Gene end: 92106625
  
Corresponding Affymetrix probe sets: 205415_s_at (Human Genome U133 Plus 2.0 Array)   205416_s_at (Human Genome U133 Plus 2.0 Array)   216657_at (Human Genome U133 Plus 2.0 Array)   217321_x_at (Human Genome U133 Plus 2.0 Array)   233182_x_at (Human Genome U133 Plus 2.0 Array)   235240_at (Human Genome U133 Plus 2.0 Array)   238723_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000450492
Ensembl peptide - ENSP00000339110
Ensembl peptide - ENSP00000352324
Ensembl peptide - ENSP00000376965
Ensembl peptide - ENSP00000389376
Ensembl peptide - ENSP00000422073
Ensembl peptide - ENSP00000425322
Ensembl peptide - ENSP00000426697
Ensembl peptide - ENSP00000435571
Ensembl peptide - ENSP00000437157
Ensembl peptide - ENSP00000445618
Ensembl peptide - ENSP00000450566
Ensembl peptide - ENSP00000450641
Ensembl peptide - ENSP00000450642
Ensembl peptide - ENSP00000451001
Ensembl peptide - ENSP00000451103
Ensembl peptide - ENSP00000451132
Ensembl peptide - ENSP00000451385
Ensembl peptide - ENSP00000451399
Ensembl peptide - ENSP00000451405
Ensembl peptide - ENSP00000451417
Ensembl peptide - ENSP00000451693
Ensembl peptide - ENSP00000451733
Ensembl peptide - ENSP00000451769
Ensembl peptide - ENSP00000451771
Ensembl peptide - ENSP00000451910
Ensembl peptide - ENSP00000451996
Ensembl peptide - ENSP00000452139
Ensembl peptide - ENSP00000452356
Ensembl peptide - ENSP00000452461
Ensembl peptide - ENSP00000452532
Ensembl peptide - ENSP00000474067
Ensembl peptide - ENSP00000478320
Ensembl peptide - ENSP00000481390
Ensembl peptide - ENSP00000481998
Ensembl peptide - ENSP00000484016
Ensembl peptide - ENSP00000493680
Ensembl peptide - ENSP00000496590
Ensembl peptide - ENSP00000496695
NCBI entrez gene - 4287     See in Manteia.
OMIM - 607047
RefSeq - NM_001164778
RefSeq - NM_001127697
RefSeq - NM_001127696
RefSeq - NM_030660
RefSeq - NM_004993
RefSeq - NM_001164780
RefSeq - NM_001164781
RefSeq - NM_001164779
RefSeq Peptide - NP_001121168
RefSeq Peptide - NP_001121169
RefSeq Peptide - NP_001158250
RefSeq Peptide - NP_001158251
RefSeq Peptide - NP_001158252
RefSeq Peptide - NP_001158253
RefSeq Peptide - NP_004984
RefSeq Peptide - NP_109376
swissprot - S4R399
swissprot - F5H211
swissprot - G3V2G1
swissprot - G3V2G2
swissprot - G3V328
swissprot - G3V390
swissprot - G3V3A6
swissprot - P54252
swissprot - G3V3R7
swissprot - G3V3S5
swissprot - G3V3T0
swissprot - G3V3T6
swissprot - G3V4B1
swissprot - G3V4F4
swissprot - G3V4F5
swissprot - G3V4U9
swissprot - G3V526
swissprot - G3V5H3
swissprot - E9PJN5
swissprot - D6R9I5
swissprot - D3VVP3
swissprot - D3VVH9
swissprot - C9JQV6
swissprot - A0A0A0MS38
swissprot - A0A087X1A8
swissprot - A0A087WXY4
Ensembl - ENSG00000066427
  
Related genetic diseases (OMIM): 109150 - Machado-Joseph disease, 109150
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atxn3ENSDARG00000099274Danio rerio
 ATXN3ENSGALG00000010766Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATXN3L / Q9H3M9 / ataxin 3 likeENSG0000012359468


Protein motifs (from Interpro)
Interpro ID Name
 IPR003903  Ubiquitin interacting motif
 IPR006155  Josephin domain
 IPR009068  S15/NS1, RNA-binding
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR033865  Machado-Joseph disease protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IMP
 biological_processGO:0006289 nucleotide-excision repair TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process ISS
 biological_processGO:0006515 protein quality control for misfolded or incompletely synthesized proteins ISS
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0010810 regulation of cell-substrate adhesion IMP
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0030036 actin cytoskeleton organization IMP
 biological_processGO:0034605 cellular response to heat ISS
 biological_processGO:0035520 monoubiquitinated protein deubiquitination ISS
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process ISS
 biological_processGO:0045104 intermediate filament cytoskeleton organization IMP
 biological_processGO:0070536 protein K63-linked deubiquitination IDA
 biological_processGO:0071108 protein K48-linked deubiquitination IDA
 biological_processGO:0071218 cellular response to misfolded protein ISS
 biological_processGO:1904294 positive regulation of ERAD pathway IMP
 biological_processGO:1904379 protein localization to cytosolic proteasome complex involved in ERAD pathway IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005759 mitochondrial matrix ISS
 cellular_componentGO:0005789 endoplasmic reticulum membrane IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0031966 mitochondrial membrane ISS
 cellular_componentGO:0042405 nuclear inclusion body ISS
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity TAS
 molecular_functionGO:0051117 ATPase binding IPI
 molecular_functionGO:0061578 Lys63-specific deubiquitinase activity IDA
 molecular_functionGO:1990380 Lys48-specific deubiquitinase activity IDA


Pathways (from Reactome)
Pathway description
Josephin domain DUBs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000544 External ophthalmoplegia 
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 HP:0000623 Supranuclear ophthalmoplegia 
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000641 Dysmetric saccades 
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 HP:0000651 Diplopia "Diplopia is a condition in which a single object is perceived as two images, it is also known as double vision." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0001151 Impaired horizontal smooth pursuit "An `abnormality of ocular smooth pursuit` (HP:0000617) characterized by an impairment of the ability to track horizontally moving objects." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001300 Parkinsonism 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002063 Rigidity 
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002078 Truncal ataxia 
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 HP:0002171 Gliosis 
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 HP:0002172 Postural instability 
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 HP:0002198 Enlarged fourth ventricle 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002459 Dysautonomia 
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 HP:0002495 Impaired vibratory sense "A decrease in the ability to perceive vibration. Clinically, this is usually tested with a tuning fork which vibrates at 128 Hz and is applied to bony prominences such as the malleoli at the ankles or the metacarpal-phalangeal joints. There is a slow decay of vibration from the tuning fork. The degree of vibratory sense loss can be crudely estimated by counting the number of seconds that the examiner can perceive the vibration longer than the patient." [HPO:curators]
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 HP:0002503 Spinocerebellar tract degeneration 
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0003394 Muscle cramps 
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 HP:0003438 Absent ankle reflexes 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003743 Genetic anticipation 
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 HP:0007089 Facial-lingual fasciculations "Fasciculations affecting the tongue muscle and the musculature of the face." [HPO:curators]
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 HP:0012532 Chronic pain "Persistent pain, usually defined as pain that has laster longer than 3 to 6 months." [HPO:probinson, pmid:1875958]
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 HP:0030454 Abnormal electrooculogram "The clinical electro-oculogram (EOG) is an electrophysiological test of function of the outer retina and retinal pigment epithelium (RPE) in which changes in electrical potential across the RPE are recorded during successive periods of dark and light adaptation." [pmid:21298321]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000185345 PRKN / O60260 / parkin RBR E3 ubiquitin protein ligase  / complex / reaction
 ENSG00000165280 VCP / P55072 / valosin containing protein  / reaction / complex
 ENSG00000119318 P54727 / RAD23B / RAD23 homolog B, nucleotide excision repair protein  / complex / reaction
 ENSG00000179262 P54725 / RAD23A / RAD23 homolog A, nucleotide excision repair protein  / reaction / complex






 

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