ENSDARG00000100060


Danio rerio

Features
Gene ID: ENSDARG00000100060
  
Biological name :exosc7
  
Synonyms : exosc7 / exosome component 7
  
Possible biological names infered from orthology : Exosome complex exonuclease RRP42 / Q15024 / Q9D0M0
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 2867014
Gene end: 2876321
  
Corresponding Affymetrix probe sets: Dr.13749.1.A1_at (Zebrafish Array)   Dr.13749.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000139168
swissprot - A0A0R4ITZ7
ZFIN ID - ZDB-GENE-050417-47
Ensembl - ENSDARG00000100060
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EXOSC7ENSGALG00000030084Gallus gallus
 EXOSC7ENSG00000075914Homo sapiens
 Exosc7ENSMUSG00000025785Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
exosc9 / exosome component 9 / Q06265* / Q9JHI7* / Exosome complex component RRP45 *ENSDARG0000000639227
exosc8 / exosome component 8 / Q96B26* / Q9D753* / Exosome complex component RRP43 *ENSDARG0000006875526


Protein motifs (from Interpro)
Interpro ID Name
 IPR001247  Exoribonuclease, phosphorolytic domain 1
 IPR015847  Exoribonuclease, phosphorolytic domain 2
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR027408  PNPase/RNase PH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
mRNA decay by 3 to 5 exoribonuclease
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
KSRP (KHSRP) binds and destabilizes mRNA
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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