ENSGALG00000030084


Gallus gallus

Features
Gene ID: ENSGALG00000030084
  
Biological name :EXOSC7
  
Synonyms : EXOSC7 / exosome component 7
  
Possible biological names infered from orthology : Exosome complex exonuclease RRP42 / Q15024 / Q9D0M0
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 43265788
Gene end: 43285281
  
Corresponding Affymetrix probe sets: Gga.12438.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046094
NCBI entrez gene - 420704     See in Manteia.
RefSeq - NM_001252154
RefSeq Peptide - NP_001239083
swissprot - A0A1D5P0B9
Ensembl - ENSGALG00000030084
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 exosc7ENSDARG00000100060Danio rerio
 EXOSC7ENSG00000075914Homo sapiens
 Exosc7ENSMUSG00000025785Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EXOSC9 / exosome complex component RRP45 / Q06265* / Q9JHI7* / exosome component 9*ENSGALG0000001188426
EXOSC8 / exosome component 8 / Q96B26* / Q9D753* / Exosome complex component RRP43 *ENSGALG0000001704823


Protein motifs (from Interpro)
Interpro ID Name
 IPR001247  Exoribonuclease, phosphorolytic domain 1
 IPR015847  Exoribonuclease, phosphorolytic domain 2
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR027408  PNPase/RNase PH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0000178 exosome (RNase complex) IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 3 to 5 exoribonuclease
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
KSRP (KHSRP) binds and destabilizes mRNA
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr