ENSGALG00000011884


Gallus gallus

Features
Gene ID: ENSGALG00000011884
  
Biological name :EXOSC9
  
Synonyms : EXOSC9 / exosome complex component RRP45
  
Possible biological names infered from orthology : exosome component 9 / Q06265 / Q9JHI7
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 54297692
Gene end: 54303109
  
Corresponding Affymetrix probe sets: Gga.16150.1.S1_at (Chicken Array)   GgaAffx.20095.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000036966
NCBI entrez gene - 619530     See in Manteia.
RefSeq - NM_001034828
RefSeq Peptide - NP_001030000
swissprot - A0A1D6UPP8
Ensembl - ENSGALG00000011884
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 exosc9ENSDARG00000006392Danio rerio
 EXOSC9ENSG00000123737Homo sapiens
 Exosc9ENSMUSG00000027714Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EXOSC7 / exosome component 7 / Q15024* / Q9D0M0* / Exosome complex exonuclease RRP42 *ENSGALG0000003008418
EXOSC8 / exosome component 8 / Q96B26* / Q9D753* / Exosome complex component RRP43 *ENSGALG0000001704817


Protein motifs (from Interpro)
Interpro ID Name
 IPR001247  Exoribonuclease, phosphorolytic domain 1
 IPR015847  Exoribonuclease, phosphorolytic domain 2
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR033100  Exosome complex component RRP45


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0030307 positive regulation of cell growth IEA
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay IEA
 biological_processGO:0071028 nuclear mRNA surveillance IEA
 biological_processGO:0071035 nuclear polyadenylation-dependent rRNA catabolic process IEA
 cellular_componentGO:0000176 nuclear exosome (RNase complex) IEA
 cellular_componentGO:0000178 exosome (RNase complex) IEA
 cellular_componentGO:0000228 nuclear chromosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0017091 AU-rich element binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 3 to 5 exoribonuclease
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
KSRP (KHSRP) binds and destabilizes mRNA
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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