ENSDARG00000101557


Danio rerio

Features
Gene ID: ENSDARG00000101557
  
Biological name :scarb1
  
Synonyms : scarb1 / scavenger receptor class B, member 1
  
Possible biological names infered from orthology : Q61009 / Q8WTV0
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 44699734
Gene end: 44748270
  
Corresponding Affymetrix probe sets: Dr.6652.1.S1_at (Zebrafish Array)   Dr.6652.1.S2_at (Zebrafish Array)   NM_198921_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130139
Ensembl peptide - ENSDARP00000152539
Ensembl peptide - ENSDARP00000137986
Ensembl peptide - ENSDARP00000137618
Ensembl peptide - ENSDARP00000133293
Ensembl peptide - ENSDARP00000131702
Ensembl peptide - ENSDARP00000130287
NCBI entrez gene - 387260     See in Manteia.
RefSeq - NM_198921
RefSeq Peptide - NP_944603
swissprot - A0A0R4IDW0
swissprot - A0A0R4IDH7
swissprot - A0A0R4IBG0
swissprot - A0A0R4I9P2
swissprot - A0A0R4IRL8
swissprot - A0A0R4IQE0
ZFIN ID - ZDB-GENE-031126-1
Ensembl - ENSDARG00000101557
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCARB1ENSGALG00000046226Gallus gallus
 Q8WTV0ENSG00000073060Homo sapiens
 Q61009ENSMUSG00000037936Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cd36 / CD36 molecule (thrombospondin receptor) / P16671* / Q08857* / CD36 molecule* / Platelet glycoprotein 4 *ENSDARG0000003263930
scarb2a / scavenger receptor class B, member 2aENSDARG0000009831229
scarb2c / scavenger receptor class B, member 2c / Q14108* / SCARB2* / scavenger receptor class B member 2*ENSDARG0000008984417


Protein motifs (from Interpro)
Interpro ID Name
 IPR002159  CD36 family
 IPR005428  CD36/scavenger receptor class B member 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Scavenging by Class B Receptors
HDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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