ENSGALG00000046226


Gallus gallus

Features
Gene ID: ENSGALG00000046226
  
Biological name :SCARB1
  
Synonyms : SCARB1 / scavenger receptor class B member 1
  
Possible biological names infered from orthology : Q61009 / Q8WTV0
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 4544980
Gene end: 4558143
  
Corresponding Affymetrix probe sets: Gga.9027.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054064
Ensembl peptide - ENSGALP00000004761
NCBI entrez gene - 416814     See in Manteia.
RefSeq - XM_415106
RefSeq - XM_015275626
RefSeq - XM_015275627
RefSeq - XM_015275624
RefSeq - XM_015275625
swissprot - F1NAN9
swissprot - A0A1D5PMI6
Ensembl - ENSGALG00000046226
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scarb1ENSDARG00000101557Danio rerio
 Q8WTV0ENSG00000073060Homo sapiens
 Q61009ENSMUSG00000037936Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCARB2 / scavenger receptor class B member 2 / O35114* / Q14108* / Lysosome membrane protein 2 *ENSGALG0000001149931
CD36 / platelet glycoprotein 4 / P16671* / Q08857* / CD36 molecule*ENSGALG0000000843931


Protein motifs (from Interpro)
Interpro ID Name
 IPR002159  CD36 family
 IPR005428  CD36/scavenger receptor class B member 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001935 endothelial cell proliferation IEA
 biological_processGO:0006707 cholesterol catabolic process IEA
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0010867 positive regulation of triglyceride biosynthetic process IEA
 biological_processGO:0010886 positive regulation of cholesterol storage IEA
 biological_processGO:0010899 regulation of phosphatidylcholine catabolic process IEA
 biological_processGO:0015914 phospholipid transport IEA
 biological_processGO:0015920 lipopolysaccharide transport IEA
 biological_processGO:0030301 cholesterol transport IEA
 biological_processGO:0031663 lipopolysaccharide-mediated signaling pathway IEA
 biological_processGO:0032497 detection of lipopolysaccharide IEA
 biological_processGO:0033344 cholesterol efflux IEA
 biological_processGO:0034375 high-density lipoprotein particle remodeling IEA
 biological_processGO:0034383 low-density lipoprotein particle clearance IEA
 biological_processGO:0034384 high-density lipoprotein particle clearance IEA
 biological_processGO:0035461 vitamin transmembrane transport IEA
 biological_processGO:0042632 cholesterol homeostasis IEA
 biological_processGO:0043534 blood vessel endothelial cell migration IEA
 biological_processGO:0043654 recognition of apoptotic cell IEA
 biological_processGO:0043691 reverse cholesterol transport IEA
 biological_processGO:0044406 adhesion of symbiont to host IEA
 biological_processGO:0050892 intestinal absorption IEA
 biological_processGO:0051000 positive regulation of nitric-oxide synthase activity IEA
 biological_processGO:0070328 triglyceride homeostasis IEA
 biological_processGO:0070508 cholesterol import IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0005901 caveola IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0001530 lipopolysaccharide binding IEA
 molecular_functionGO:0001540 amyloid-beta binding IEA
 molecular_functionGO:0001875 lipopolysaccharide receptor activity IEA
 molecular_functionGO:0008035 high-density lipoprotein particle binding IEA
 molecular_functionGO:0030169 low-density lipoprotein particle binding IEA
 molecular_functionGO:0034185 apolipoprotein binding IEA
 molecular_functionGO:0034186 apolipoprotein A-I binding IEA
 molecular_functionGO:0070506 high-density lipoprotein particle receptor activity IEA


Pathways (from Reactome)
Pathway description
Scavenging by Class B Receptors
HDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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