ENSDARG00000102855


Danio rerio

Features
Gene ID: ENSDARG00000102855
  
Biological name :neo1a
  
Synonyms : neo1a / neogenin 1a
  
Possible biological names infered from orthology : NEO1 / neogenin / neogenin 1 / Q92859
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 53754653
Gene end: 54089325
  
Corresponding Affymetrix probe sets: Dr.18117.2.S1_a_at (Zebrafish Array)   NM_173218_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000135352
Ensembl peptide - ENSDARP00000147445
Ensembl peptide - ENSDARP00000139036
Ensembl peptide - ENSDARP00000137310
NCBI entrez gene - 266983     See in Manteia.
RefSeq - NM_173218
RefSeq - NM_001328497
RefSeq Peptide - NP_001315426
RefSeq Peptide - NP_775325
swissprot - A0A0R4IWY1
swissprot - A0A0R4IP15
swissprot - A0A0R4IIB3
ZFIN ID - ZDB-GENE-021031-1
Ensembl - ENSDARG00000102855
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NEO1ENSGALG00000001774Gallus gallus
 NEO1ENSG00000067141Homo sapiens
 Neo1ENSMUSG00000032340Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
neo1b / neogenin 1b / NEO1* / Q92859* / neogenin* / neogenin 1*ENSDARG0000007510067
CABZ01088906.1 / DCC* / P43146* / DCC netrin 1 receptor*ENSDARG0000010428238
sdk2b / sidekick cell adhesion molecule 2b / SDK2* / Q6V4S5* / Q58EX2* / Protein sidekick-2 * / sidekick cell adhesion molecule 2*ENSDARG0000006045221
sdk1a / sidekick cell adhesion molecule 1a / SDK1* / Q7Z5N4* / Q3UH53* / Protein sidekick-1 * / sidekick cell adhesion molecule 1*ENSDARG0000007886621
sdk1b / sidekick cell adhesion molecule 1b / SDK1* / Q7Z5N4* / Q3UH53* / Protein sidekick-1 * / sidekick cell adhesion molecule 1*ENSDARG0000006285421
si:ch211-148f13.1 / SDK2* / Q6V4S5* / Q58EX2* / Protein sidekick-2 * / sidekick cell adhesion molecule 2*ENSDARG0000010216120
dscama / Down syndrome cell adhesion molecule a / DSCAM* / Q9ERC8* / O60469* / DS cell adhesion molecule* / Down syndrome cell adhesion molecule homolog *ENSDARG0000002486520
igdcc4 / immunoglobulin superfamily, DCC subclass, member 4 / Q8TDY8* / Q9EQS9*ENSDARG0000007691919
dscamb / Down syndrome cell adhesion molecule b / DSCAM* / Q9ERC8* / O60469* / DS cell adhesion molecule* / Down syndrome cell adhesion molecule homolog *ENSDARG0000002811819
dscaml1 / Down syndrome cell adhesion molecule like 1 / Q8TD84* / DS cell adhesion molecule like 1*ENSDARG0000009805716
prtgb / protogenin homolog b (Gallus gallus) / PRTG* / Q2EY15* / Q2VWP7* / protogenin*ENSDARG0000004044215
igdcc3 / immunoglobulin superfamily, DCC subclass, member 3 / Q8BQC3* / Q8IVU1*ENSDARG0000007515814
si:ch211-57n23.4ENSDARG0000007855713
neo1b / neogenin 1bENSDARG000001020696


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR010560  Neogenin, C-terminal
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR033024  Neogenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0001841 neural tube formation IMP
 biological_processGO:0007399 nervous system development IMP
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0030513 positive regulation of BMP signaling pathway IEA
 biological_processGO:0055072 iron ion homeostasis IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain structure , abnormal
brain anterior-posterior axis decreased size , abnormal
Show

 ZFA:0000029 hindbrain hindbrain morphology , abnormal
hindbrain neuron decreased amount , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000100 cerebellum cerebellum morphology , abnormal
Show

 ZFA:0000101 diencephalon diencephalon morphology , abnormal
diencephalon lacks all parts of type third ventricle , abnormal
Show

 ZFA:0000155 somite somite decreased thickness , abnormal
somite increased width , abnormal
somite U-shaped , abnormal
somite elongated , abnormal
somite flattened , abnormal
Show

 ZFA:0000160 tegmentum tegmentum morphology , abnormal
Show

 ZFA:0000295 trigeminal ganglion trigeminal ganglion neuron decreased amount , abnormal
Show

 ZFA:0000318 brainstem and spinal white matter brainstem and spinal white matter axon decreased amount , abnormal
Show

 ZFA:0000543 medial longitudinal fasciculus medial longitudinal fasciculus decreased thickness , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism viability , abnormal
whole organism necrotic , abnormal
whole organism decreased length , abnormal
Show

 ZFA:0001114 head head flattened , abnormal
Show

 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
Show

 ZFA:0001135 neural tube neural tube unlumenized , abnormal
Show

 ZFA:0005209 hindbrain interneuron hindbrain interneuron decreased amount , abnormal
Show

 ZFA:0005266 dorsal longitudinal fasciculus dorsal longitudinal fasciculus decreased thickness , abnormal
Show

 ZFA:0007001 dorso-rostral cluster dorso-rostral cluster neuron decreased amount , abnormal
dorso-rostral cluster neuron projection mislocalised dorsally , abnormal
dorso-rostral cluster axon extension process quality , abnormal
Show

 ZFA:0009150 Rohon-Beard neuron Rohon-Beard neuron decreased amount , abnormal
Show

 ZFA:0009243 CaP motoneuron CaP motoneuron axon decreased amount , abnormal
Show

 ZFA:0009244 primary motor neuron primary motor neuron decreased amount , abnormal
Show

 ZFA:0009306 neuroepithelial cell neuroepithelial cell mislocalised , abnormal
neuroepithelial cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr