ENSDARG00000104353


Danio rerio

Features
Gene ID: ENSDARG00000104353
  
Biological name :nop58
  
Synonyms : nop58 / NOP58 ribonucleoprotein homolog (yeast)
  
Possible biological names infered from orthology : NOP58 ribonucleoprotein / Nucleolar protein 58 / Q6DFW4 / Q9Y2X3
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 9664206
Gene end: 9695294
  
Corresponding Affymetrix probe sets: Dr.20916.1.A1_at (Zebrafish Array)   Dr.282.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000131046
Ensembl peptide - ENSDARP00000140730
NCBI entrez gene - 494152     See in Manteia.
swissprot - A0A0R4IWL8
swissprot - Q6P6X6
ZFIN ID - ZDB-GENE-040426-2140
Ensembl - ENSDARG00000104353
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOP58ENSGALG00000008454Gallus gallus
 NOP58ENSG00000055044Homo sapiens
 Nop58ENSMUSG00000026020Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002687  Nop domain
 IPR012974  NOP5, N-terminal
 IPR012976  NOSIC


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
SUMOylation of RNA binding proteins
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary decreased thickness , abnormal
midbrain hindbrain boundary condensed , abnormal
midbrain hindbrain boundary quality , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
yolk quality , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
eye necrotic , abnormal
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 ZFA:0000109 forebrain forebrain pointed , abnormal
forebrain quality , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001094 whole organism whole organism shape , abnormal
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 ZFA:0001114 head head decreased size , abnormal
head necrotic , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
post-vent region curved , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000044267 sumo1 / Q7SZR5 / small ubiquitin-like modifier 1 / P63166* / P63165* / Small ubiquitin-related modifier 1 *  / reaction / complex
 ENSDARG00000102741 sumo2b / Q6DHL4 / small ubiquitin-like modifier 2b / SUMO4* / SUMO2* / Q6EEV6* / P61956* / P61957* / small ubiquitin-like modifier 4* / small ubiquitin-like modifier 2*  / reaction
 ENSDARG00000007438 ube2ib / Q9W6H5 / ubiquitin-conjugating enzyme E2Ib / UBE2I* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000052649 Q9DDJ0 / ube2ia / ubiquitin-conjugating enzyme E2Ia / UBE2I* / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction






 

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