ENSDARG00000111939


Danio rerio

Features
Gene ID: ENSDARG00000111939
  
Biological name :atf4a
  
Synonyms : activating transcription factor 4a / atf4a / Q6NW59
  
Possible biological names infered from orthology : activating transcription factor 4 / ATF4 / Cyclic AMP-dependent transcription factor ATF-4 / P18848 / Q06507
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 269204
Gene end: 272554
  
Corresponding Affymetrix probe sets: Dr.5846.1.A1_at (Zebrafish Array)   NM_213233_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000145766
NCBI entrez gene - 406514     See in Manteia.
RefSeq - XM_005172055
RefSeq - NM_213233
RefSeq Peptide - NP_998398
swissprot - Q6NW59
ZFIN ID - ZDB-GENE-040426-2340
Ensembl - ENSDARG00000111939
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATF4ENSGALG00000012135Gallus gallus
 ATF4ENSG00000128272Homo sapiens
 Atf4ENSMUSG00000042406Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
atf4b / activating transcription factor 4b / ATF4* / P18848* / Q06507* / activating transcription factor 4* / Cyclic AMP-dependent transcription factor ATF-4 *ENSDARG0000003814137
atf5a / activating transcription factor 5a / ATF5* / O70191* / Q9Y2D1* / activating transcription factor 5* / Cyclic AMP-dependent transcription factor ATF-5 *ENSDARG0000006809623
atf5b / activating transcription factor 5b / ATF5* / O70191* / Q9Y2D1* / activating transcription factor 5* / Cyclic AMP-dependent transcription factor ATF-5 *ENSDARG0000007778517


Protein motifs (from Interpro)
Interpro ID Name
 IPR004827  Basic-leucine zipper domain
 IPR029811  cAMP-dependent transcription factor ATF-4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048511 rhythmic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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