Manteia

ENSDARG00000114099

Danio rerio

Features

Gene ID:	ENSDARG00000114099

Biological name :	trim35-30

Synonyms :	trim35-30 / tripartite motif containing 35-30

Possible biological names infered from orthology :	Q9UPQ4 / TRIM35 / tripartite motif containing 35

Species:	Danio rerio

Chr. number:	18
Strand:	-1
Band:
Gene start:	7622040
Gene end:	7631301

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000062165 NCBI entrez gene - 100034496 See in Manteia. RefSeq - NM_001083070 RefSeq Peptide - NP_001076539 swissprot - Q1L9F9 ZFIN ID - ZDB-GENE-060503-557 Ensembl - ENSDARG00000114099

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
TRIM35	ENSGALG00000016595	Gallus gallus
Q9UPQ4	ENSG00000104228	Homo sapiens
Trim35	ENSMUSG00000022043	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
trim35-24 / tripartite motif containing 35-24 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000099684	41
trim35-22 / tripartite motif containing 35-22 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102264	40
trim35-23 / tripartite motif containing 35-23 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102368	40
si:ch211-12p12.2 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102219	39
trim35-19 / tripartite motif containing 35-19 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000099639	39
trim35-39 / tripartite motif containing 35-39 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000071241	39
si:ch211-175l6.2 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000100721	39
trim35-21 / tripartite motif containing 35-21 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102303	39
trim35-25 / tripartite motif containing 35-25 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000101055	39
trim35-10 / tripartite motif containing 35-10 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000033071	39
si:dkey-37m8.11 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000040230	38
trim35-20 / tripartite motif containing 35-20 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000070847	38
trim35-7 / tripartite motif containing 35-7 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000058958	37
si:ch1073-324l1.1 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000095913	37
trim35-3 / tripartite motif containing 35-3 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000052255	37
zmp:0000001316 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000092407	37
trim35-33 / tripartite motif containing 35-33 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000060838	36
CU571315.1 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000031534	36
CR394535.1 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000103193	36
trim35-27 / tripartite motif containing 35-27 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000035009	36

Protein motifs (from Interpro)

Interpro ID	Name
IPR000315	B-box-type zinc finger
IPR001841	Zinc finger, RING-type
IPR001870	B30.2/SPRY domain
IPR003877	SPRY domain
IPR003879	Butyrophylin-like, SPRY domain
IPR006574	SPRY-associated
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0008150	biological_process	ND
cellular_component	GO:0005622	intracellular	IEA
molecular_function	GO:0008270	zinc ion binding	IEA
molecular_function	GO:0046872	metal ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr