ENSDARG00000115766


Danio rerio

Features
Gene ID: ENSDARG00000115766
  
Biological name :si:ch73-36p18.1
  
Synonyms : si:ch73-36p18.1
  
Possible biological names infered from orthology : Gm6970 / HIST1H1A / HIST1H1B / HIST1H1C / HIST1H1D / HIST1H1E / HIST1H1T / histone cluster 1, H1c / histone cluster 1 H1 family member a / histone cluster 1 H1 family member b / histone cluster 1 H1 family member c / histone cluster 1 H1 family member d / histone cluster 1 H1 family member e / histone cluster 1 H1 family member t / Histone H1.1 / Histone H1.3 / Histone H1.4 / Histone H1.5 / P10412 / P15864 / P16401 / P16402 / P16403 / P22492 / P43274 / P43275 / P43276 / P43277 / Q02539
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 35121332
Gene end: 35121946
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000122796
NCBI entrez gene - 100334868     See in Manteia.
swissprot - E9QFU6
ZFIN ID - ZDB-GENE-131121-2
Ensembl - ENSDARG00000115766
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000011747Gallus gallus
 HIST1H111RENSGALG00000011783Gallus gallus
 P08284ENSGALG00000031874Gallus gallus
 P08285ENSGALG00000037167Gallus gallus
 P08286ENSGALG00000031159Gallus gallus
 P10412ENSG00000168298Homo sapiens
 P16401ENSG00000184357Homo sapiens
 P16402ENSG00000124575Homo sapiens
 P16403ENSG00000187837Homo sapiens
 P22492ENSG00000187475Homo sapiens
 Q02539ENSG00000124610Homo sapiens
 Gm6970ENSMUSG00000091230Mus musculus
 Hist1h1tENSMUSG00000036211Mus musculus
 P15864ENSMUSG00000036181Mus musculus
 P43274ENSMUSG00000051627Mus musculus
 P43275ENSMUSG00000049539Mus musculus
 P43276ENSMUSG00000058773Mus musculus
 P43277ENSMUSG00000052565Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-108k21.10 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / H...ENSDARG00000075508100
si:dkey-108k21.14 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / H...ENSDARG0000011084199
si:dkey-108k21.21 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / H...ENSDARG0000009190599
si:dkey-23a13.17 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / HI...ENSDARG0000010532897
si:ch73-368j24.11 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / H...ENSDARG0000010543096
si:dkey-23a13.9 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / HIS...ENSDARG0000010543194
si:ch1073-153i20.4 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / ...ENSDARG0000010535093
si:ch73-368j24.12 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / H...ENSDARG0000010550293
si:ch1073-159d7.7 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / H...ENSDARG0000007401293
zgc:153405 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / HIST1H1E...ENSDARG0000009699292
si:ch211-113a14.18 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / ...ENSDARG0000005173591
si:ch211-113a14.24 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / ...ENSDARG0000005171890
si:dkey-261m9.12 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / HI...ENSDARG0000003263789
zgc:110216 / si:ch211-113a14.12 / P16403* / P16402* / P16401* / P10412* / P15864* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P22492* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* /...ENSDARG0000007745689
zgc:110425 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / HIST1H1E...ENSDARG0000005847972
histh1l / histone H1 like / Q02539* / Gm6970* / P10412* / P15864* / P16401* / P16402* / P16403* / P22492* / P43274* / P43275* / P43276* / P43277* / HIST1H1C* / HIST1H1B* / HIST1H1A* / HIST1...ENSDARG0000003551968
si:ch211-103n10.5 / P22492* / P16403* / P16402* / P16401* / P15864* / P10412* / Gm6970* / Q02539* / P43277* / P43276* / P43275* / P43274* / HIST1H1A* / HIST1H1B* / HIST1H1C* / HIST1H1D* / H...ENSDARG0000007750447
zgc:163061 / P22492* / P16403* / P16402* / P16401* / P10412* / Q02539* / HIST1H1B* / HIST1H1C* / HIST1H1D* / HIST1H1E* / HIST1H1T* / HIST1H1A* / histone cluster 1 H1 family member e* / hist...ENSDARG0000007676637
zgc:163061 / P22492* / P16403* / P16402* / P16401* / P10412* / Q02539* / HIST1H1B* / HIST1H1C* / HIST1H1D* / HIST1H1E* / HIST1H1T* / HIST1H1A* / histone cluster 1 H1 family member e* / hist...ENSDARG0000007553837


Protein motifs (from Interpro)
Interpro ID Name
 IPR005818  Linker histone H1/H5, domain H15
 IPR005819  Histone H5
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IEA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Activation of DNA fragmentation factor
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr