ENSG00000005102


Homo sapiens

Features
Gene ID: ENSG00000005102
  
Biological name :MEOX1
  
Synonyms : MEOX1 / mesenchyme homeobox 1 / P50221
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q21.31
Gene start: 43640388
Gene end: 43661954
  
Corresponding Affymetrix probe sets: 205619_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000321684
Ensembl peptide - ENSP00000328678
Ensembl peptide - ENSP00000377271
Ensembl peptide - ENSP00000449049
NCBI entrez gene - 4222     See in Manteia.
OMIM - 600147
RefSeq - XM_011524818
RefSeq - NM_001040002
RefSeq - NM_004527
RefSeq - NM_013999
RefSeq Peptide - NP_001035091
RefSeq Peptide - NP_004518
RefSeq Peptide - NP_054705
swissprot - P50221
swissprot - F8VXS6
Ensembl - ENSG00000005102
  
Related genetic diseases (OMIM): 214300 - Klippel-Feil syndrome 2, 214300

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Meox1ENSMUSG00000001493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MEOX2 / P50222 / mesenchyme homeobox 2ENSG0000010651146
GBX2 / P52951 / gastrulation brain homeobox 2ENSG0000016850524
GBX1 / Q14549 / gastrulation brain homeobox 1ENSG0000016490024
MNX1 / P50219 / motor neuron and pancreas homeobox 1ENSG0000013067523
NKX1-1 / Q15270 / NK1 homeobox 1ENSG0000023560821
EVX1 / P49640 / even-skipped homeobox 1ENSG0000010603820
NKX1-2 / Q9UD57 / NK1 homeobox 2ENSG0000022954420
EVX2 / Q03828 / even-skipped homeobox 2ENSG0000017427919
VENTX / O95231 / VENT homeoboxENSG0000015165019


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001757 somite specification IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0008150 biological_process ND
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0060218 hematopoietic stem cell differentiation ISS
 biological_processGO:0061053 somite development IBA
 biological_processGO:0061056 sclerotome development ISS
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding ISS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding ISS
 molecular_functionGO:0071837 HMG box domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000324 Facial asymmetry 
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 HP:0000365 Hearing loss 
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000465 Webbed neck 
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 HP:0000466 Limited neck range of motion 
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 HP:0000470 Short neck 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0001291 Abnormality of the cranial nerves "Abnormality affecting one or more of the cranial nerves, which emerge directly from the brain stem." [HPO:curators.]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002162 Low posterior hairline 
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002949 Fused cervical vertebrae 
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 HP:0003043 Abnormality of the shoulder "An abnormality of the shoulder, which is defined as the structures surrounding the shoulder joint where the humerus attaches to the scapula." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004397 Ectopic anus "Abnormal displacement or malposition of the anus." [HPO:curators]
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 HP:0004602 cervical vertebral fusion, c2-c3 "Fusion of cervical vertebrae, most common of the vertebrae C2 and C3, caused by a failure in the normal segmentation or division of the cervical vertebrae during the early weeks of fetal development, leading to a short neck with a low hairline at the back of the head, and restricted mobility of the upper spine." [HPO:curators]
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 HP:0005107 Abnormality of the sacrum 
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 HP:0005640 Abnormal vertebral segmentation and fusion 
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 HP:0005988 Torticollis, congenital 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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