ENSG00000005893


Homo sapiens

Features
Gene ID: ENSG00000005893
  
Biological name :LAMP2
  
Synonyms : LAMP2 / lysosomal associated membrane protein 2 / P13473
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q24
Gene start: 120427827
Gene end: 120469365
  
Corresponding Affymetrix probe sets: 200821_at (Human Genome U133 Plus 2.0 Array)   203041_s_at (Human Genome U133 Plus 2.0 Array)   203042_at (Human Genome U133 Plus 2.0 Array)   226671_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000200639
Ensembl peptide - ENSP00000360386
Ensembl peptide - ENSP00000408411
Ensembl peptide - ENSP00000431526
NCBI entrez gene - 3920     See in Manteia.
OMIM - 309060
RefSeq - NM_001122606
RefSeq - NM_002294
RefSeq - NM_013995
RefSeq Peptide - NP_001116078
RefSeq Peptide - NP_002285
RefSeq Peptide - NP_054701
swissprot - P13473
swissprot - H0YCG2
Ensembl - ENSG00000005893
  
Related genetic diseases (OMIM): 300257 - Danon disease, 300257
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lamp2ENSDARG00000014914Danio rerio
 LAMP2ENSGALG00000008572Gallus gallus
 Lamp2ENSMUSG00000016534Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LAMP1 / P11279 / lysosomal associated membrane protein 1ENSG0000018589635
CD68 / P34810 / CD68 moleculeENSG0000012922619
LAMP3 / Q9UQV4 / lysosomal associated membrane protein 3ENSG0000007808118


Protein motifs (from Interpro)
Interpro ID Name
 IPR002000  Lysosome-associated membrane glycoprotein
 IPR018134  Lysosome-associated membrane glycoprotein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002576 platelet degranulation TAS
 biological_processGO:0006605 protein targeting ISS
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0009267 cellular response to starvation ISS
 biological_processGO:0017038 protein import TAS
 biological_processGO:0031647 regulation of protein stability IMP
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0046716 muscle cell cellular homeostasis IEA
 biological_processGO:0050821 protein stabilization ISS
 biological_processGO:0061684 chaperone-mediated autophagy ISS
 biological_processGO:0061740 protein targeting to lysosome involved in chaperone-mediated autophagy ISS
 biological_processGO:0097352 autophagosome maturation ISS
 biological_processGO:1905146 lysosomal protein catabolic process IMP
 cellular_componentGO:0000421 autophagosome membrane IEA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005764 lysosome IDA
 cellular_componentGO:0005765 lysosomal membrane IDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030670 phagocytic vesicle membrane IEA
 cellular_componentGO:0031088 platelet dense granule membrane IDA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031902 late endosome membrane IDA
 cellular_componentGO:0035577 azurophil granule membrane TAS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0044754 autolysosome IDA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0070062 extracellular exosome IDA
 cellular_componentGO:0097637 integral component of autophagosome membrane IEA
 cellular_componentGO:0098857 membrane microdomain TAS
 cellular_componentGO:0101003 ficolin-1-rich granule membrane TAS
 cellular_componentGO:1990836 lysosomal matrix IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0019904 protein domain specific binding IEA


Pathways (from Reactome)
Pathway description
Platelet degranulation
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000505 Impaired vision 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001640 Cardiomegaly 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001685 Myocardial fibrosis 
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 HP:0001700 Myocardial necrosis 
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 HP:0001716 Wolf-Parkinson-White syndrome 
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 HP:0001761 Pes cavus 
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 HP:0002375 Hypokinesia 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003546 Exercise intolerance 
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 HP:0003700 Generalized amyotrophy "Generalized wasting of loss of muscle tissue." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003710 Muscle cramps with exercise 
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 HP:0003812 Phenotypic variability 
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 HP:0006543 Cardiorespiratory arrest 
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 HP:0010547 Muscle flaccidity "A type of paralysis in which a muscle becomes soft and yields to passive stretching, which results from loss of all or practically all peripheral motor nerves that innervated the muscle. Muscle tone is reduced and the affected muscles undergo extreme atrophy within months of the loss of innervation." [HPO:curators]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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