ENSG00000020577


Homo sapiens

Features
Gene ID: ENSG00000020577
  
Biological name :SAMD4A
  
Synonyms : Q9UPU9 / SAMD4A / sterile alpha motif domain containing 4A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q22.2
Gene start: 54567097
Gene end: 54793315
  
Corresponding Affymetrix probe sets: 212845_at (Human Genome U133 Plus 2.0 Array)   215120_s_at (Human Genome U133 Plus 2.0 Array)   215495_s_at (Human Genome U133 Plus 2.0 Array)   215496_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000375919
Ensembl peptide - ENSP00000452535
Ensembl peptide - ENSP00000486821
Ensembl peptide - ENSP00000251091
Ensembl peptide - ENSP00000450808
NCBI entrez gene - 23034     See in Manteia.
OMIM - 610747
RefSeq - NM_001161577
RefSeq - NM_001161576
RefSeq - NM_015589
RefSeq Peptide - NP_001155049
RefSeq Peptide - NP_001155048
RefSeq Peptide - NP_056404
swissprot - Q9UPU9
swissprot - G3V2R1
Ensembl - ENSG00000020577
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 samd4aENSDARG00000075759Danio rerio
 SAMD4AENSGALG00000041790Gallus gallus
 1 ENSMUSG00000021838Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5PRF9 / SAMD4B / sterile alpha motif domain containing 4BENSG0000017913460


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR037093  Smaug, PHAT domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IBA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0043488 regulation of mRNA stability IBA
 biological_processGO:0045727 positive regulation of translation IDA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030371 translation repressor activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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