ENSG00000073734


Homo sapiens

Features
Gene ID: ENSG00000073734
  
Biological name :ABCB11
  
Synonyms : ABCB11 / ATP binding cassette subfamily B member 11 / O95342
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q31.1
Gene start: 168922938
Gene end: 169031322
  
Corresponding Affymetrix probe sets: 208288_at (Human Genome U133 Plus 2.0 Array)   211224_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000263817
Ensembl peptide - ENSP00000416058
NCBI entrez gene - 8647     See in Manteia.
OMIM - 603201
RefSeq - XM_017005167
RefSeq - NM_003742
RefSeq - XM_011512081
RefSeq - XM_017005165
RefSeq - XM_017005166
RefSeq - XM_006712817
RefSeq - XM_011512077
RefSeq - XM_011512078
RefSeq - XM_011512080
RefSeq Peptide - NP_003733
swissprot - O95342
swissprot - H7C486
Ensembl - ENSG00000073734
  
Related genetic diseases (OMIM): 601847 - Cholestasis, progressive familial intrahepatic 2, 601847
  605479 - Cholestasis, benign recurrent intrahepatic, 2, 605479
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abcb11bENSDARG00000070078Danio rerio
 ABCB11ENSGALG00000010891Gallus gallus
 Abcb11ENSMUSG00000027048Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCB1 / P08183 / ATP binding cassette subfamily B member 1ENSG0000008556349
ABCB4 / P21439 / ATP binding cassette subfamily B member 4ENSG0000000547148
ABCB5 / Q2M3G0 / ATP binding cassette subfamily B member 5ENSG0000000484644


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030278  Bile salt export pump
 IPR036640  ABC transporter type 1, transmembrane domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006699 bile acid biosynthetic process TAS
 biological_processGO:0015721 bile acid and bile salt transport IEA
 biological_processGO:0015722 canalicular bile acid transport IBA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0099132 ATP hydrolysis coupled cation transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045177 apical part of cell IEA
 cellular_componentGO:0046581 intercellular canaliculus IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005215 transporter activity TAS
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008554 sodium-exporting ATPase activity, phosphorylative mechanism TAS
 molecular_functionGO:0015126 canalicular bile acid transmembrane transporter activity IBA
 molecular_functionGO:0015432 bile acid-exporting ATPase activity TAS
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA


Pathways (from Reactome)
Pathway description
Recycling of bile acids and salts
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
Defective ABCB11 causes progressive familial intrahepatic cholestasis 2 and benign recurrent intrahepatic cholestasis 2


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001046 Intermittent jaundice "Jaundice that is sometimes present, sometimes not." [HPO:curators]
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 HP:0001081 Cholelithiasis 
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 HP:0001394 Cirrhosis 
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 HP:0001402 Hepatocellular carcinoma 
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 HP:0001406 Intrahepatic cholestasis 
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 HP:0001508 Failure to thrive 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0002014 Diarrhea 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002630 Fat malabsorption 
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 HP:0002908 Conjugated hyperbilirubinemia 
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003593 Early onset 
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 HP:0003819 Death in childhood 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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