ENSG00000005471


Homo sapiens

Features
Gene ID: ENSG00000005471
  
Biological name :ABCB4
  
Synonyms : ABCB4 / ATP binding cassette subfamily B member 4 / P21439
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q21.12
Gene start: 87401697
Gene end: 87480435
  
Corresponding Affymetrix probe sets: 1570505_at (Human Genome U133 Plus 2.0 Array)   207819_s_at (Human Genome U133 Plus 2.0 Array)   209994_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000493477
Ensembl peptide - ENSP00000395716
Ensembl peptide - ENSP00000496629
Ensembl peptide - ENSP00000265723
Ensembl peptide - ENSP00000351172
Ensembl peptide - ENSP00000352135
Ensembl peptide - ENSP00000392983
Ensembl peptide - ENSP00000394511
NCBI entrez gene - 5244     See in Manteia.
OMIM - 171060
RefSeq - XM_017012323
RefSeq - XM_011516309
RefSeq - XM_011516310
RefSeq - XM_011516311
RefSeq - XM_011516312
RefSeq - XM_011516313
RefSeq - XM_011516315
RefSeq - NM_000443
RefSeq - NM_018849
RefSeq - NM_018850
RefSeq - XM_011516308
RefSeq Peptide - NP_061338
RefSeq Peptide - NP_000434
RefSeq Peptide - NP_061337
swissprot - H7C0M2
swissprot - P21439
swissprot - E7EQI1
Ensembl - ENSG00000005471
  
Related genetic diseases (OMIM): 600803 - Gallbladder disease 1, 600803
  602347 - Cholestasis, progressive familial intrahepatic 3, 602347
  614972 - Cholestasis, intrahepatic, of pregnancy, 3, 614972
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abcb4ENSDARG00000010936Danio rerio
 ABCB1ENSGALG00000008912Gallus gallus
 Abcb4ENSMUSG00000042476Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCB1 / P08183 / ATP binding cassette subfamily B member 1ENSG0000008556376
ABCB5 / Q2M3G0 / ATP binding cassette subfamily B member 5ENSG0000000484653
ABCB11 / O95342 / ATP binding cassette subfamily B member 11ENSG0000007373449


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030275  Multidrug resistance protein 3
 IPR036640  ABC transporter type 1, transmembrane domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0001890 placenta development IEA
 biological_processGO:0006629 lipid metabolic process TAS
 biological_processGO:0006855 drug transmembrane transport IEA
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007595 lactation IEA
 biological_processGO:0007623 circadian rhythm IEA
 biological_processGO:0009914 hormone transport IEA
 biological_processGO:0010033 response to organic substance IEA
 biological_processGO:0010046 response to mycotoxin IEA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0014072 response to isoquinoline alkaloid IEA
 biological_processGO:0019216 regulation of lipid metabolic process TAS
 biological_processGO:0031667 response to nutrient levels IEA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0032376 positive regulation of cholesterol transport IMP
 biological_processGO:0032496 response to lipopolysaccharide IEA
 biological_processGO:0032782 bile acid secretion ISS
 biological_processGO:0033189 response to vitamin A IEA
 biological_processGO:0033231 carbohydrate export IEA
 biological_processGO:0033280 response to vitamin D IEA
 biological_processGO:0033762 response to glucagon IEA
 biological_processGO:0035633 maintenance of permeability of blood-brain barrier IEA
 biological_processGO:0036146 cellular response to mycotoxin IEA
 biological_processGO:0042493 response to drug TAS
 biological_processGO:0042908 xenobiotic transport IEA
 biological_processGO:0043215 daunorubicin transport IEA
 biological_processGO:0043278 response to morphine IEA
 biological_processGO:0045332 phospholipid translocation IDA
 biological_processGO:0046618 drug export IEA
 biological_processGO:0046686 response to cadmium ion IEA
 biological_processGO:0050892 intestinal absorption IEA
 biological_processGO:0055085 transmembrane transport TAS
 biological_processGO:0055088 lipid homeostasis IDA
 biological_processGO:0060548 negative regulation of cell death IEA
 biological_processGO:0060856 establishment of blood-brain barrier IEA
 biological_processGO:0061092 positive regulation of phospholipid translocation IDA
 biological_processGO:0071217 cellular response to external biotic stimulus IEA
 biological_processGO:0071236 cellular response to antibiotic IEA
 biological_processGO:0071312 cellular response to alkaloid IEA
 biological_processGO:0071392 cellular response to estradiol stimulus IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:0071475 cellular hyperosmotic salinity response IEA
 biological_processGO:0071548 response to dexamethasone IEA
 biological_processGO:0071549 cellular response to dexamethasone stimulus IEA
 biological_processGO:0097068 response to thyroxine IEA
 biological_processGO:0097327 response to antineoplastic agent IEA
 biological_processGO:1901557 response to fenofibrate ISS
 biological_processGO:1902065 response to L-glutamate IEA
 biological_processGO:1903413 cellular response to bile acid IDA
 biological_processGO:1903416 response to glycoside IEA
 biological_processGO:1904478 regulation of intestinal absorption IEA
 biological_processGO:1905231 cellular response to borneol IEA
 biological_processGO:1905232 cellular response to L-glutamate IEA
 biological_processGO:1905233 response to codeine IEA
 biological_processGO:1905235 response to quercetin IEA
 biological_processGO:1905237 response to cyclosporin A IEA
 biological_processGO:1990962 drug transport across blood-brain barrier IEA
 biological_processGO:1990963 establishment of blood-retinal barrier IEA
 biological_processGO:2001025 positive regulation of response to drug IEA
 biological_processGO:2001140 positive regulation of phospholipid transport IMP
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005925 focal adhesion IDA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0030136 clathrin-coated vesicle IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031526 brush border membrane IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0045177 apical part of cell IEA
 cellular_componentGO:0046581 intercellular canaliculus IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0005548 phospholipid transporter activity TAS
 molecular_functionGO:0008525 phosphatidylcholine transporter activity IMP
 molecular_functionGO:0008559 xenobiotic transmembrane transporting ATPase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances TAS
 molecular_functionGO:0090554 phosphatidylcholine-translocating ATPase activity IMP


Pathways (from Reactome)
Pathway description
PPARA activates gene expression
ABC-family proteins mediated transport
Defective ABCB4 causes progressive familial intrahepatic cholestasis 3, intrahepatic cholestasis of pregnancy 3 and gallbladder disease 1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001081 Cholelithiasis 
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 HP:0001082 Cholecystitis 
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 HP:0001394 Cirrhosis 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001406 Intrahepatic cholestasis 
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 HP:0001408 Bile duct proliferation 
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 HP:0001425 Heterogeneous 
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 HP:0001622 Premature birth 
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 HP:0001733 Pancreatitis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0002014 Diarrhea 
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 HP:0002024 Malabsorption 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003593 Early onset 
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 HP:0006580 Mild portal fibrosis 
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 HP:0011980 Cholesterol gallstones "Gallstones composed primarily of cholesterol, usually about 2-3 cm in length with an oval form and a yellow or green/brown color." [HPO:probinson, pmid:12950109, pmid:16844493]
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 HP:0025116 Fetal distress "An intrauterine state characterized by suboptimal values in the fetal heart rate, oxygenation of fetal blood, or other parameters indicative of compromise of the fetus. Signs of fetal distress include repetitive variable decelerations, fetal tachycardia or bradycardia, late decelerations, or low biophysical profile." []
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 HP:0030151 Cholangitis "Inflammation of the biliary ductal system, affecting the intrahepatic or extrahepatic portions, or both." [HPO:probinson]
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 HP:0200148 Abnormal liver function tests during pregnancy 
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 HP:0200150 increased serum bile acid concentration during pregnancy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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