ENSDARG00000010936


Danio rerio

Features
Gene ID: ENSDARG00000010936
  
Biological name :abcb4
  
Synonyms : abcb4 / ATP-binding cassette, sub-family B (MDR/TAP), member 4
  
Possible biological names infered from orthology : ABCB1 / Abcb1a / Abcb1b / ATP-binding cassette, sub-family B (MDR/TAP), member 1B / ATP binding cassette subfamily B member 1 / ATP binding cassette subfamily B member 4 / Multidrug resistance protein 1A / P06795 / P08183 / P21439 / P21440 / P21447 / Phosphatidylcholine translocator ABCB4
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 28629242
Gene end: 28658341
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000123836
NCBI entrez gene - 100136865     See in Manteia.
swissprot - E7F1E3
ZFIN ID - ZDB-GENE-080204-52
Ensembl - ENSDARG00000010936
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABCB1ENSGALG00000008912Gallus gallus
 ABCB1ENSG00000085563Homo sapiens
 ABCB4ENSG00000005471Homo sapiens
 Abcb1aENSMUSG00000040584Mus musculus
 Abcb1bENSMUSG00000028970Mus musculus
 Abcb4ENSMUSG00000042476Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
abcb5 / ATP-binding cassette, sub-family B (MDR/TAP), member 5ENSDARG0000002178756
abcb11b / ATP-binding cassette, sub-family B (MDR/TAP), member 11b / ABCB11* / O95342* / Q9QY30* / ATP binding cassette subfamily B member 11* / ATP-binding cassette, sub-family B (MDR/TAP)...ENSDARG0000007007851
abcb11a / ATP-binding cassette, sub-family B (MDR/TAP), member 11aENSDARG0000001157351


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009636 response to toxic substance IDA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071806 protein transmembrane transport IEA
 biological_processGO:1901998 toxin transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0015462 ATPase-coupled protein transmembrane transporter activity IDA
 molecular_functionGO:0015562 efflux transmembrane transporter activity IMP
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0019534 toxin transmembrane transporter activity IDA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA


Pathways (from Reactome)
Pathway description
ABC-family proteins mediated transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr