ENSG00000088812


Homo sapiens

Features
Gene ID: ENSG00000088812
  
Biological name :ATRN
  
Synonyms : ATRN / attractin / O75882
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: p13
Gene start: 3471040
Gene end: 3651122
  
Corresponding Affymetrix probe sets: 211852_s_at (Human Genome U133 Plus 2.0 Array)   212517_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000262919
Ensembl peptide - ENSP00000416587
NCBI entrez gene - 8455     See in Manteia.
OMIM - 603130
RefSeq - NM_139321
RefSeq - NM_001207047
RefSeq - NM_001323332
RefSeq - NM_139322
RefSeq Peptide - NP_001193976
RefSeq Peptide - NP_001310261
RefSeq Peptide - NP_647537
RefSeq Peptide - NP_647538
swissprot - O75882
Ensembl - ENSG00000088812
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atrnENSDARG00000062164Danio rerio
 ATRNENSGALG00000016034Gallus gallus
 AtrnENSMUSG00000027312Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATRNL1 / Q5VV63 / attractin like 1ENSG0000010751858
MEGF8 / Q7Z7M0 / multiple EGF like domains 8ENSG0000010542924


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR000859  CUB domain
 IPR001304  C-type lectin-like
 IPR002049  Laminin EGF domain
 IPR002165  Plexin repeat
 IPR006652  Kelch repeat type 1
 IPR011043  Galactose oxidase/kelch, beta-propeller
 IPR013032  EGF-like, conserved site
 IPR015915  Kelch-type beta propeller
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR016201  PSI domain
 IPR034011  Attractin-like, C-type lectin-like domain
 IPR035914  Spermadhesin, CUB domain superfamily
 IPR037293  Galactose oxidase, central domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0006979 response to oxidative stress IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0040014 regulation of multicellular organism growth IEA
 biological_processGO:0042552 myelination IEA
 biological_processGO:0043473 pigmentation IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane NAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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