ENSG00000091106


Homo sapiens

Features
Gene ID: ENSG00000091106
  
Biological name :NLRC4
  
Synonyms : NLRC4 / NLR family CARD domain containing 4 / Q9NPP4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p22.3
Gene start: 32224453
Gene end: 32265854
  
Corresponding Affymetrix probe sets: 1552553_a_at (Human Genome U133 Plus 2.0 Array)   1552554_a_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000339666
Ensembl peptide - ENSP00000354159
Ensembl peptide - ENSP00000385090
Ensembl peptide - ENSP00000385428
NCBI entrez gene - 58484     See in Manteia.
OMIM - 606831
RefSeq - NM_001199139
RefSeq - NM_001199138
RefSeq - NM_001302504
RefSeq - NM_021209
RefSeq Peptide - NP_001186067
RefSeq Peptide - NP_001186068
RefSeq Peptide - NP_001289433
RefSeq Peptide - NP_067032
swissprot - Q9NPP4
Ensembl - ENSG00000091106
  
Related genetic diseases (OMIM): 616050 - Autoinflammation with infantile enterocolitis, 616050
  616115 - ?Familial cold autoinflammatory syndrome 4, 616115
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Nlrc4ENSMUSG00000039193Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NAIP / Q13075 / NLR family apoptosis inhibitory proteinENSG0000024943723
BIRC2 / Q13490 / baculoviral IAP repeat containing 2ENSG000001103307
BIRC3 / Q13489 / baculoviral IAP repeat containing 3ENSG000000234456
XIAP / P98170 / X-linked inhibitor of apoptosisENSG000001019664
BIRC7 / Q96CA5 / baculoviral IAP repeat containing 7ENSG000001011973
BIRC8 / Q96P09 / baculoviral IAP repeat containing 8ENSG000001630983


Protein motifs (from Interpro)
Interpro ID Name
 IPR001315  CARD domain
 IPR007111  NACHT nucleoside triphosphatase
 IPR011029  Death-like domain superfamily
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002218 activation of innate immune response IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process IDA
 biological_processGO:0006954 inflammatory response ISS
 biological_processGO:0009966 regulation of signal transduction IBA
 biological_processGO:0016045 detection of bacterium IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0042742 defense response to bacterium IEA
 biological_processGO:0042981 regulation of apoptotic process TAS
 biological_processGO:0043065 positive regulation of apoptotic process IDA
 biological_processGO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
 biological_processGO:0045087 innate immune response IBA
 biological_processGO:0050702 interleukin-1 beta secretion IDA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IDA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0070269 pyroptosis IEA
 biological_processGO:1990001 inhibition of cysteine-type endopeptidase activity involved in apoptotic process IBA
 cellular_componentGO:0005622 intracellular NAS
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0072557 IPAF inflammasome complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000287 magnesium ion binding TAS
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IDA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process IBA


Pathways (from Reactome)
Pathway description
TP53 Regulates Transcription of Caspase Activators and Caspases
The IPAF inflammasome


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000538 Pseudopapilledema 
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 HP:0000554 Uveitis "Inflammation of one or all portions of the uveal tract." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000979 Purpura 
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 HP:0000988 Skin rash 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001025 Urticaria 
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 HP:0001156 Brachydactyly 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001287 Meningitis 
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 HP:0001369 Arthritis 
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001476 Delayed closure of the anterior fontanelle "A delay in closure (ossification) of the anterior fontanelle, which generally undergoes closure around the 18th month of life." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001622 Premature birth 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001872 Abnormality of thrombocytes 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001876 Pancytopenia 
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 HP:0001903 Anemia 
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 HP:0001944 Dehydration 
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 HP:0001945 Fever 
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 HP:0001959 Polydipsia 
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 HP:0001974 Leukocytosis "An abnormal increase in the number of `leukocytes` (CL:0000738) in the `blood` (FMA:9670)." [HPO:probinson]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002027 Abdominal pain 
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 HP:0002076 Migraine 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002516 Increased intracranial pressure 
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 HP:0002652 Skeletal dysplasia 
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 HP:0002716 Lymphadenopathy 
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 HP:0002829 Arthralgia 
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 HP:0003281 Increased serum ferritin 
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003565 Elevated erythrocyte sedimentation rate 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
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 HP:0004387 Enterocolitis 
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 HP:0005521 Disseminated intravascular coagulation 
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0011227 Elevated C-reactive protein level "An abnormal elevation of the C-reactive protein level in serum." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012534 Dysesthesia "Abnormal sensations with no apparent physical cause that are painful or unpleasant." [ORCID:0000-0001-5208-3432]
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 HP:0025303 Episodic "Applied to a sign, symptom, or other manifestation that occurs at least twice and potentially multiple times but separated by an interval in whichthe sign, symptom, or manifestation is not present." []
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 HP:0100654 Retrobulbar optic neuritis "`Optic neuritis`(HP:0100653) that occurs in the section of the optic nerve located behind the eyebal." [HPO:sdoelken]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000137752 CASP1 / P29466 / caspase 1  / reaction / complex






 

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