ENSG00000101986


Homo sapiens

Features
Gene ID: ENSG00000101986
  
Biological name :ABCD1
  
Synonyms : ABCD1 / ATP binding cassette subfamily D member 1 / P33897
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q28
Gene start: 153724868
Gene end: 153744762
  
Corresponding Affymetrix probe sets: 205142_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000218104
Ensembl peptide - ENSP00000359147
NCBI entrez gene - 215     See in Manteia.
OMIM - 300371
RefSeq - NM_000033
RefSeq Peptide - NP_000024
swissprot - A6NEP8
swissprot - P33897
Ensembl - ENSG00000101986
  
Related genetic diseases (OMIM): 300100 - Adrenoleukodystrophy, 300100
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abcd1ENSDARG00000074876Danio rerio
 Abcd1ENSMUSG00000031378Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCD2 / Q9UBJ2 / ATP binding cassette subfamily D member 2ENSG0000017320863
ABCD3 / P28288 / ATP binding cassette subfamily D member 3ENSG0000011752834
ABCD4 / O14678 / ATP binding cassette subfamily D member 4ENSG0000011968822


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR005283  Peroxysomal long chain fatty acyl transporter
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031237  ATP-binding cassette sub-family D member 1
 IPR036640  ABC transporter type 1, transmembrane domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006635 fatty acid beta-oxidation IEA
 biological_processGO:0007031 peroxisome organization NAS
 biological_processGO:0015910 peroxisomal long-chain fatty acid import IGI
 biological_processGO:0015919 peroxisomal membrane transport NAS
 biological_processGO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase TAS
 biological_processGO:0036109 alpha-linolenic acid metabolic process TAS
 biological_processGO:0042758 long-chain fatty acid catabolic process IGI
 biological_processGO:0042760 very long-chain fatty acid catabolic process IGI
 biological_processGO:0043651 linoleic acid metabolic process TAS
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005777 peroxisome IDA
 cellular_componentGO:0005778 peroxisomal membrane IEA
 cellular_componentGO:0005779 integral component of peroxisomal membrane NAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005215 transporter activity NAS
 molecular_functionGO:0005324 long-chain fatty acid transporter activity IGI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IDA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA


Pathways (from Reactome)
Pathway description
ABC transporters in lipid homeostasis
Linoleic acid (LA) metabolism
alpha-linolenic acid (ALA) metabolism
Beta-oxidation of very long chain fatty acids
Defective ABCD1 causes adrenoleukodystrophy (ALD)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000572 Visual loss 
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 HP:0000618 Blindness 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000802 Impotence 
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 HP:0000924 Abnormality of the musculoskeletal system "An abnormality of the musculoskeletal system including one or more abnormalities affecting bones, muscles, cartilage, tendons, ligaments, joints, and other connective tissue." [HPO:curators]
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 HP:0000953 Hyperpigmentation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001258 Spastic paraplegia 
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001350 Slurred speech 
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002078 Truncal ataxia 
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 HP:0002180 Neurodegeneration 
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 HP:0002311 Incoordination 
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 HP:0002371 Loss of speech 
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 HP:0002385 Paraparesis 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002607 Bowel incontinence 
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0003455 Elevated long chain fatty acids 
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 HP:0003676 Progressive disorder 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0008207 Primary adrenal insufficiency 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000162735 PEX19 / P40855 / peroxisomal biogenesis factor 19  / complex
 ENSG00000173208 ABCD2 / Q9UBJ2 / ATP binding cassette subfamily D member 2  / complex
 ENSG00000101986 ABCD1 / P33897 / ATP binding cassette subfamily D member 1  / complex
 ENSG00000117528 ABCD3 / P28288 / ATP binding cassette subfamily D member 3  / complex
 ENSG00000034693 PEX3 / P56589 / peroxisomal biogenesis factor 3  / reaction






 

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