ENSG00000119688


Homo sapiens

Features
Gene ID: ENSG00000119688
  
Biological name :ABCD4
  
Synonyms : ABCD4 / ATP binding cassette subfamily D member 4 / O14678
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q24.3
Gene start: 74285423
Gene end: 74303056
  
Corresponding Affymetrix probe sets: 203981_s_at (Human Genome U133 Plus 2.0 Array)   203982_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000451770
Ensembl peptide - ENSP00000451521
Ensembl peptide - ENSP00000451778
Ensembl peptide - ENSP00000452430
Ensembl peptide - ENSP00000451993
Ensembl peptide - ENSP00000349396
Ensembl peptide - ENSP00000432557
Ensembl peptide - ENSP00000432630
Ensembl peptide - ENSP00000434626
Ensembl peptide - ENSP00000434792
Ensembl peptide - ENSP00000436527
Ensembl peptide - ENSP00000436782
Ensembl peptide - ENSP00000450491
Ensembl peptide - ENSP00000450611
Ensembl peptide - ENSP00000450960
Ensembl peptide - ENSP00000450982
Ensembl peptide - ENSP00000451457
NCBI entrez gene - 5826     See in Manteia.
OMIM - 603214
RefSeq - XM_017021544
RefSeq - XM_017021531
RefSeq - XM_017021532
RefSeq - XM_017021533
RefSeq - XM_017021534
RefSeq - XM_017021535
RefSeq - XM_017021536
RefSeq - XM_017021537
RefSeq - XM_017021538
RefSeq - XM_017021539
RefSeq - XM_017021540
RefSeq - XM_017021541
RefSeq - XM_017021542
RefSeq - XM_017021543
RefSeq - NM_001353595
RefSeq - NM_005050
RefSeq - XM_005267939
RefSeq - XM_005267940
RefSeq - XM_005267941
RefSeq - XM_005267942
RefSeq - XM_005267946
RefSeq - XM_005267949
RefSeq - XM_006720223
RefSeq - XM_011537041
RefSeq Peptide - NP_001340524
RefSeq Peptide - NP_005041
swissprot - G3V3W1
swissprot - G3V4U7
swissprot - H0YCY9
swissprot - H0YJ78
swissprot - E9PPB6
swissprot - H0YJL8
swissprot - H0YJX8
swissprot - O14678
swissprot - A0A024R6B9
swissprot - H0YJ82
swissprot - E9PI46
Ensembl - ENSG00000119688
  
Related genetic diseases (OMIM): 614857 - Methylmalonic aciduria and homocystinuria, cblJ type, 614857
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abcd4ENSDARG00000061770Danio rerio
 ABCD4ENSGALG00000010229Gallus gallus
 Abcd4ENSMUSG00000021240Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCD3 / P28288 / ATP binding cassette subfamily D member 3ENSG0000011752828
ABCD1 / P33897 / ATP binding cassette subfamily D member 1ENSG0000010198627
ABCD2 / Q9UBJ2 / ATP binding cassette subfamily D member 2ENSG0000017320826


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036640  ABC transporter type 1, transmembrane domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009235 cobalamin metabolic process TAS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005778 peroxisomal membrane IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043190 ATP-binding cassette (ABC) transporter complex NAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA


Pathways (from Reactome)
Pathway description
Cobalamin (Cbl, vitamin B12) transport and metabolism
Defective ABCD4 causes methylmalonic aciduria and homocystinuria, cblj type (MAHCJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001903 Anemia 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002059 Cerebral atrophy 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002156 Homocystinuria 
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 HP:0002160 Homocystinemia 
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 HP:0002533 Abnormal posturing 
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 HP:0002789 Tachypnea 
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 HP:0002912 Methylmalonic acidemia 
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 HP:0003145 Decreased adenosylcobalamin (ADOCBL) 
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 HP:0003223 Decreased methylcobalamin (MECBL) 
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 HP:0003524 Decreased methionine synthase (MTR, 156570) activity 
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 HP:0003577 Onset at birth 
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 HP:0006610 Wide intermamillary distance 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012120 Methylmalonic aciduria "Increased concentration of `methylmalonic acid` (CHEBI:30860) in the urine." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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