ENSG00000102104


Homo sapiens

Features
Gene ID: ENSG00000102104
  
Biological name :RS1
  
Synonyms : O15537 / retinoschisin 1 / RS1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: p22.13
Gene start: 18639910
Gene end: 18672109
  
Corresponding Affymetrix probe sets: 207363_at (Human Genome U133 Plus 2.0 Array)   216937_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000369320
NCBI entrez gene - 6247     See in Manteia.
OMIM - 300839
RefSeq - NM_000330
RefSeq Peptide - NP_000321
swissprot - O15537
Ensembl - ENSG00000102104
  
Related genetic diseases (OMIM): 312700 - Retinoschisis, 312700
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rs1aENSDARG00000027236Danio rerio
 RS1ENSGALG00000016523Gallus gallus
 Rs1ENSMUSG00000031293Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
F5 / P12259 / coagulation factor VENSG0000019873436
F8 / P00451 / coagulation factor VIIIENSG0000018501030
EDIL3 / O43854 / EGF like repeats and discoidin domains 3ENSG0000016417627
MFGE8 / Q08431 / milk fat globule-EGF factor 8 proteinENSG0000014054525
NRP2 / O60462 / neuropilin 2ENSG0000011825725
NRP1 / O14786 / neuropilin 1ENSG0000009925024
DCBLD2 / Q96PD2 / discoidin, CUB and LCCL domain containing 2ENSG0000005701915
HEPHL1 / Q6MZM0 / hephaestin like 1ENSG0000018133315
CP / P00450 / ceruloplasminENSG0000004745714
HEPH / Q9BQS7 / hephaestinENSG0000008947214
DCBLD1 / Q8N8Z6 / discoidin, CUB and LCCL domain containing 1ENSG0000016446510


Protein motifs (from Interpro)
Interpro ID Name
 IPR000421  Coagulation factor 5/8 C-terminal domain
 IPR008979  Galactose-binding-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion TAS
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0010842 retina layer formation IEA
 biological_processGO:0016062 adaptation of rhodopsin mediated signaling IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051260 protein homooligomerization IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0019897 extrinsic component of plasma membrane IEA
 molecular_functionGO:0001786 phosphatidylserine binding IEA
 molecular_functionGO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEA
 molecular_functionGO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding IEA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0010314 phosphatidylinositol-5-phosphate binding IEA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IEA
 molecular_functionGO:0043325 phosphatidylinositol-3,4-bisphosphate binding IEA
 molecular_functionGO:0070273 phosphatidylinositol-4-phosphate binding IEA
 molecular_functionGO:0070492 oligosaccharide binding IBA
 molecular_functionGO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000496 Abnormality of eye movement "An abnormality in voluntary or involuntary eye movements or their control." [HPO:probinson]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000540 Hypermetropia 
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 HP:0000541 Detached retina 
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 HP:0001105 Retinal atrophy 
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 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
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 HP:0007401 Primary noninflammatory macular atrophy 
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 HP:0007667 Cystic retinal degeneration 
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 HP:0007722 Loss of retinal pigment epithelium 
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 HP:0007902 Vitreous hemorrhage 
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 HP:0007984 Electroretinogram shows a reduced b-wave in most cases 
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 HP:0030502 Retinoschisis "Splitting of the neuroretinal layers of the retina." [HPO:probinson]
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 HP:0030824 Mizuo phenomenon "Change in the color of the fundus from red in the dark-adapted state to golden immediately or shortly after the onset of the light. The color of the fundus reflex in the light adapted state has also been described as golden-yellow, gray-white, and yellow-white. This reflex can appear either homogeneous or in streaks in the fundus. The retinal vessels appear to be protruding in contrast to the radiant background. Dark adaptation leads to disappearance of the unusual fundus coloration [Digital Journal of Ophthalmology 2008; Volume 14, Number 14]." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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