ENSG00000110090


Homo sapiens

Features
Gene ID: ENSG00000110090
  
Biological name :CPT1A
  
Synonyms : carnitine palmitoyltransferase 1A / CPT1A / P50416
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q13.3
Gene start: 68754620
Gene end: 68844410
  
Corresponding Affymetrix probe sets: 203633_at (Human Genome U133 Plus 2.0 Array)   203634_s_at (Human Genome U133 Plus 2.0 Array)   210687_at (Human Genome U133 Plus 2.0 Array)   210688_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457663
Ensembl peptide - ENSP00000455116
Ensembl peptide - ENSP00000457826
Ensembl peptide - ENSP00000265641
Ensembl peptide - ENSP00000365803
Ensembl peptide - ENSP00000439084
Ensembl peptide - ENSP00000446108
Ensembl peptide - ENSP00000454332
NCBI entrez gene - 1374     See in Manteia.
OMIM - 600528
RefSeq - XM_017017220
RefSeq - NM_001031847
RefSeq - NM_001876
RefSeq - XM_005273762
RefSeq - XM_005273763
RefSeq Peptide - NP_001027017
RefSeq Peptide - NP_001867
swissprot - H3BMD2
swissprot - H3BP22
swissprot - H3BUJ0
swissprot - P50416
swissprot - H3BUV7
swissprot - A0A024R5F4
Ensembl - ENSG00000110090
  
Related genetic diseases (OMIM): 255120 - CPT deficiency, hepatic, type IA, 255120
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpt1aaENSDARG00000059770Danio rerio
 cpt1abENSDARG00000062054Danio rerio
 CPT1AENSGALG00000007077Gallus gallus
 Cpt1aENSMUSG00000024900Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CPT1B / Q92523 / carnitine palmitoyltransferase 1BENSG0000020556063
CPT1C / Q8TCG5 / carnitine palmitoyltransferase 1CENSG0000016916955
CHAT / P28329 / choline O-acetyltransferaseENSG0000007074826
CRAT / P43155 / carnitine O-acetyltransferaseENSG0000009532125
CROT / Q9UKG9 / carnitine O-octanoyltransferaseENSG0000000546923


Protein motifs (from Interpro)
Interpro ID Name
 IPR000542  Acyltransferase ChoActase/COT/CPT
 IPR032476  Carnitine O-palmitoyltransferase, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001676 long-chain fatty acid metabolic process IDA
 biological_processGO:0006006 glucose metabolic process IEA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006631 fatty acid metabolic process IEA
 biological_processGO:0006635 fatty acid beta-oxidation TAS
 biological_processGO:0006641 triglyceride metabolic process IEA
 biological_processGO:0006853 carnitine shuttle TAS
 biological_processGO:0007623 circadian rhythm TAS
 biological_processGO:0009437 carnitine metabolic process IDA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0019216 regulation of lipid metabolic process TAS
 biological_processGO:0030855 epithelial cell differentiation IEP
 biological_processGO:0032000 positive regulation of fatty acid beta-oxidation IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042755 eating behavior IEA
 biological_processGO:0046320 regulation of fatty acid oxidation IEA
 biological_processGO:0050796 regulation of insulin secretion IEA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0071398 cellular response to fatty acid IEA
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005741 mitochondrial outer membrane TAS
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031307 integral component of mitochondrial outer membrane ISS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0004095 carnitine O-palmitoyltransferase activity TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:1990698 palmitoleoyltransferase activity IEA


Pathways (from Reactome)
Pathway description
RORA activates gene expression
PPARA activates gene expression
Import of palmitoyl-CoA into the mitochondrial matrix
Signaling by Retinoic Acid


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001259 Coma 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001315 Reduced reflexes 
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 HP:0001397 Hepatic steatosis 
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 HP:0001399 Hepatic failure 
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001640 Cardiomegaly 
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 HP:0001645 Sudden cardiac death 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0001947 Renal tubular acidosis 
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 HP:0001985 Hypoketotic hypoglycemia 
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 HP:0001987 Hyperammonemia 
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 HP:0002014 Diarrhea 
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 HP:0002167 Neurological speech impairment 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002686 Prenatal maternal abnormality 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0007185 Loss of consciousness 
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 HP:0007335 Encephalopathy, recurrent 
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 HP:0008279 Transient hyperlipidemia 
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 HP:0008872 Feeding problems in infancy 
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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