ENSG00000112739


Homo sapiens

Features
Gene ID: ENSG00000112739
  
Biological name :PRPF4B
  
Synonyms : pre-mRNA processing factor 4B / PRPF4B / Q13523
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p25.2
Gene start: 4021267
Gene end: 4064983
  
Corresponding Affymetrix probe sets: 202126_at (Human Genome U133 Plus 2.0 Array)   202127_at (Human Genome U133 Plus 2.0 Array)   211090_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000433714
Ensembl peptide - ENSP00000337194
Ensembl peptide - ENSP00000433547
NCBI entrez gene - 8899     See in Manteia.
OMIM - 602338
RefSeq - XM_017011435
RefSeq - XM_017011431
RefSeq - XM_017011432
RefSeq - XM_017011433
RefSeq - XM_017011434
RefSeq - NM_003913
RefSeq - XM_011514970
RefSeq - XM_017011410
RefSeq - XM_017011411
RefSeq - XM_017011412
RefSeq - XM_017011413
RefSeq - XM_017011414
RefSeq - XM_017011415
RefSeq - XM_017011416
RefSeq - XM_017011417
RefSeq - XM_017011418
RefSeq - XM_017011419
RefSeq - XM_017011420
RefSeq - XM_017011421
RefSeq - XM_017011422
RefSeq - XM_017011423
RefSeq - XM_017011424
RefSeq - XM_017011425
RefSeq - XM_017011426
RefSeq - XM_017011427
RefSeq - XM_017011428
RefSeq - XM_017011429
RefSeq - XM_017011430
RefSeq Peptide - NP_003904
swissprot - H0YDJ3
swissprot - A0A024QZY5
swissprot - Q13523
Ensembl - ENSG00000112739
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf4baENSDARG00000008784Danio rerio
 prpf4bbENSDARG00000040310Danio rerio
 ENSGALG00000043751Gallus gallus
 ENSGALG00000012813Gallus gallus
 Prpf4bENSMUSG00000021413Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CLK2 / P49760 / CDC like kinase 2ENSG0000017644415
CLK3 / P49761 / CDC like kinase 3ENSG0000017933515
CLK1 / P49759 / CDC like kinase 1ENSG0000001344115
CLK4 / Q9HAZ1 / CDC like kinase 4ENSG0000011324014


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR008271  Serine/threonine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IC
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0016310 phosphorylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004674 protein serine/threonine kinase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr