ENSG00000113140


Homo sapiens

Features
Gene ID: ENSG00000113140
  
Biological name :SPARC
  
Synonyms : P09486 / secreted protein acidic and cysteine rich / SPARC
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q33.1
Gene start: 151661096
Gene end: 151687165
  
Corresponding Affymetrix probe sets: 200665_s_at (Human Genome U133 Plus 2.0 Array)   212667_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000444998
Ensembl peptide - ENSP00000231061
Ensembl peptide - ENSP00000428119
Ensembl peptide - ENSP00000429152
Ensembl peptide - ENSP00000440127
NCBI entrez gene - 6678     See in Manteia.
OMIM - 182120
RefSeq - NM_001309444
RefSeq - NM_001309443
RefSeq - NM_003118
RefSeq Peptide - NP_001296372
RefSeq Peptide - NP_003109
RefSeq Peptide - NP_001296373
swissprot - P09486
swissprot - E5RJA5
swissprot - E5RK62
swissprot - F5GY03
swissprot - F5H4E2
Ensembl - ENSG00000113140
  
Related genetic diseases (OMIM): 616507 - Osteogenesis imperfecta, type XVII, 616507
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sparcENSDARG00000019353Danio rerio
 SPARCENSGALG00000004184Gallus gallus
 SparcENSMUSG00000018593Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q14515 / SPARCL1 / SPARC like 1ENSG0000015258351


Protein motifs (from Interpro)
Interpro ID Name
 IPR001999  Osteonectin-like, conserved site
 IPR002350  Kazal domain
 IPR003645  Follistatin-like, N-terminal
 IPR011992  EF-hand domain pair
 IPR015369  Follistatin/Osteonectin EGF domain
 IPR018247  EF-Hand 1, calcium-binding site
 IPR019577  SPARC/Testican, calcium-binding domain
 IPR036058  Kazal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001503 ossification IEA
 biological_processGO:0001937 negative regulation of endothelial cell proliferation IDA
 biological_processGO:0002576 platelet degranulation TAS
 biological_processGO:0006898 receptor-mediated endocytosis TAS
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0009629 response to gravity IEA
 biological_processGO:0010288 response to lead ion IEA
 biological_processGO:0010595 positive regulation of endothelial cell migration IDA
 biological_processGO:0016525 negative regulation of angiogenesis IDA
 biological_processGO:0022604 regulation of cell morphogenesis IDA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030324 lung development IEA
 biological_processGO:0032496 response to lipopolysaccharide IEA
 biological_processGO:0033591 response to L-ascorbic acid IEA
 biological_processGO:0034097 response to cytokine IEA
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0043434 response to peptide hormone IEA
 biological_processGO:0043473 pigmentation IEA
 biological_processGO:0045471 response to ethanol IEA
 biological_processGO:0046686 response to cadmium ion IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0051384 response to glucocorticoid IEA
 biological_processGO:0051591 response to cAMP IEA
 biological_processGO:0051592 response to calcium ion IEA
 biological_processGO:0060348 bone development IEA
 biological_processGO:0071363 cellular response to growth factor stimulus IEA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016363 nuclear matrix IDA
 cellular_componentGO:0031091 platelet alpha granule IDA
 cellular_componentGO:0031092 platelet alpha granule membrane IDA
 cellular_componentGO:0031093 platelet alpha granule lumen TAS
 cellular_componentGO:0031982 vesicle IEA
 cellular_componentGO:0071682 endocytic vesicle lumen TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005518 collagen binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050840 extracellular matrix binding IEA


Pathways (from Reactome)
Pathway description
Platelet degranulation
ECM proteoglycans
Scavenging by Class H Receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000977 Soft skin 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002953 Vertebral compression fractures 
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 HP:0003199 Decreased muscle mass 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006086 Thin metacarpal cortices 
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 HP:0030746 Intraventricular hemorrhage "Bleeding into the ventricles of the brain." [UToronto:chum]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000010327 STAB1 / Q9NY15 / stabilin 1  / complex / reaction






 

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