ENSG00000116984


Homo sapiens

Features
Gene ID: ENSG00000116984
  
Biological name :MTR
  
Synonyms : 5-methyltetrahydrofolate-homocysteine methyltransferase / MTR / Q99707
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q43
Gene start: 236795281
Gene end: 236903981
  
Corresponding Affymetrix probe sets: 203774_at (Human Genome U133 Plus 2.0 Array)   226969_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000441845
Ensembl peptide - ENSP00000355535
Ensembl peptide - ENSP00000355536
NCBI entrez gene - 4548     See in Manteia.
OMIM - 156570
RefSeq - XM_017001330
RefSeq - NM_000254
RefSeq - NM_001291939
RefSeq - NM_001291940
RefSeq - XM_005273141
RefSeq - XM_006711770
RefSeq - XM_011544194
RefSeq - XM_017001329
RefSeq Peptide - NP_000245
RefSeq Peptide - NP_001278868
RefSeq Peptide - NP_001278869
swissprot - B1ANE3
swissprot - Q99707
Ensembl - ENSG00000116984
  
Related genetic diseases (OMIM): 250940 - Homocystinuria-megaloblastic anemia, cblG complementation type, 250940
  601634 - {Neural tube defects, folate-sensitive, susceptibility to}, 601634
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mtrENSDARG00000104906Danio rerio
 MTRENSGALG00000014464Gallus gallus
 MtrENSMUSG00000021311Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000489  Pterin-binding domain
 IPR003726  Homocysteine-binding domain
 IPR003759  Cobalamin (vitamin B12)-binding module, cap domain
 IPR004223  Vitamin B12-dependent methionine synthase, activation domain
 IPR006158  Cobalamin (vitamin B12)-binding domain
 IPR011005  Dihydropteroate synthase-like
 IPR011822  Cobalamin-dependent methionine synthase
 IPR033706  Methionine synthase, B12-binding domain
 IPR036589  Homocysteine-binding domain superfamily
 IPR036594  Methionine synthase domain
 IPR036724  Cobalamin-binding domain superfamily
 IPR037010  Vitamin B12-dependent methionine synthase, activation domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000096 sulfur amino acid metabolic process TAS
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0008652 cellular amino acid biosynthetic process IEA
 biological_processGO:0009086 methionine biosynthetic process IMP
 biological_processGO:0009235 cobalamin metabolic process IMP
 biological_processGO:0031103 axon regeneration ISS
 biological_processGO:0032259 methylation TAS
 biological_processGO:0042558 pteridine-containing compound metabolic process IEA
 biological_processGO:0044237 cellular metabolic process IEA
 biological_processGO:0048678 response to axon injury ISS
 biological_processGO:0071732 cellular response to nitric oxide ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0008705 methionine synthase activity IMP
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0031419 cobalamin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Methylation
Sulfur amino acid metabolism
Cobalamin (Cbl, vitamin B12) transport and metabolism
Defective MTRR causes methylmalonic aciduria and homocystinuria type cblE
Defective MTR causes methylmalonic aciduria and homocystinuria type cblG


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001889 Megaloblastic anemia 
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 HP:0002059 Cerebral atrophy 
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 HP:0002156 Homocystinuria 
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 HP:0002160 Homocystinemia 
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 HP:0002370 Poor coordination 
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 HP:0003223 Decreased methylcobalamin (MECBL) 
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 HP:0003524 Decreased methionine synthase (MTR, 156570) activity 
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 HP:0003593 Early onset 
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 HP:0003658 Decreased serum methionine 
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 HP:0008872 Feeding problems in infancy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000124275 MTRR / Q9UBK8 / 5-methyltetrahydrofolate-homocysteine methyltransferase reductase  / complex






 

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