ENSG00000130489


Homo sapiens

Features
Gene ID: ENSG00000130489
  
Biological name :SCO2
  
Synonyms : O43819 / SCO2 / SCO2, cytochrome c oxidase assembly protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q13.33
Gene start: 50523568
Gene end: 50525606
  
Corresponding Affymetrix probe sets: 205241_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000252785
Ensembl peptide - ENSP00000379046
NCBI entrez gene - 9997     See in Manteia.
OMIM - 604272
RefSeq - NM_001169111
RefSeq - NM_005138
RefSeq Peptide - NP_001162582
RefSeq Peptide - NP_005129
swissprot - O43819
Ensembl - ENSG00000130489
  
Related genetic diseases (OMIM): 604377 - Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1, 604377
  608908 - Myopia 6, 608908
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sco2ENSDARG00000045555Danio rerio
 Sco2ENSMUSG00000091780Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCO2 / SCO2, cytochrome c oxidase assembly proteinENSG00000284194100
SCO1 / O75880 / SCO1, cytochrome c oxidase assembly proteinENSG0000013302839


Protein motifs (from Interpro)
Interpro ID Name
 IPR003782  Copper chaperone SCO1/SenC
 IPR013766  Thioredoxin domain
 IPR017276  Synthesis of cytochrome c oxidase, Sco1/Sco2
 IPR036249  Thioredoxin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IMP
 biological_processGO:0006825 copper ion transport IEA
 biological_processGO:0006878 cellular copper ion homeostasis IEA
 biological_processGO:0008535 respiratory chain complex IV assembly IEA
 biological_processGO:0033617 mitochondrial respiratory chain complex IV assembly IMP
 biological_processGO:0045454 cell redox homeostasis IEA
 biological_processGO:0055114 oxidation-reduction process TAS
 biological_processGO:0097034 obsolete mitochondrial respiratory chain complex IV biogenesis IMP
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0030016 myofibril IDA
 cellular_componentGO:0031305 integral component of mitochondrial inner membrane IDA
 molecular_functionGO:0005507 copper ion binding NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015035 protein disulfide oxidoreductase activity IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
TP53 Regulates Metabolic Genes
Respiratory electron transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0002098 Respiratory distress 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003577 Onset at birth 
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 HP:0006999 Cell loss and gliosis in the basal ganglia 
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 HP:0007941 Limited extraocular movements 
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 HP:0008872 Feeding problems in infancy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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