ENSG00000133028


Homo sapiens

Features
Gene ID: ENSG00000133028
  
Biological name :SCO1
  
Synonyms : O75880 / SCO1 / SCO1, cytochrome c oxidase assembly protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: p13.1
Gene start: 10672474
Gene end: 10698375
  
Corresponding Affymetrix probe sets: 223221_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000255390
Ensembl peptide - ENSP00000463387
Ensembl peptide - ENSP00000464032
NCBI entrez gene - 6341     See in Manteia.
OMIM - 603644
RefSeq - XM_005256751
RefSeq - NM_004589
RefSeq Peptide - NP_004580
swissprot - J3QL56
swissprot - O75880
swissprot - J3QR42
Ensembl - ENSG00000133028
  
Related genetic diseases (OMIM): 220110 - Mitochondrial complex IV deficiency, 220110
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sco1ENSDARG00000067593Danio rerio
 SCO1ENSGALG00000030475Gallus gallus
 Sco1ENSMUSG00000069844Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCO2 / SCO2, cytochrome c oxidase assembly proteinENSG0000028419434
SCO2 / O43819 / SCO2, cytochrome c oxidase assembly proteinENSG0000013048934


Protein motifs (from Interpro)
Interpro ID Name
 IPR003782  Copper chaperone SCO1/SenC
 IPR017276  Synthesis of cytochrome c oxidase, Sco1/Sco2
 IPR036249  Thioredoxin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006091 generation of precursor metabolites and energy TAS
 biological_processGO:0006825 copper ion transport IEA
 biological_processGO:0006878 cellular copper ion homeostasis IEA
 biological_processGO:0008535 respiratory chain complex IV assembly TAS
 biological_processGO:0033617 mitochondrial respiratory chain complex IV assembly IEA
 biological_processGO:1901799 negative regulation of proteasomal protein catabolic process IEA
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0030016 myofibril IDA
 cellular_componentGO:0031305 integral component of mitochondrial inner membrane IDA
 cellular_componentGO:0072492 host cell mitochondrial intermembrane space IDA
 molecular_functionGO:0005507 copper ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
TP53 Regulates Metabolic Genes
Respiratory electron transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000093 Proteinuria 
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 HP:0000124 Renal tubular dysfunction 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000648 Optic atrophy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001410 Decreased liver function 
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 HP:0001425 Heterogeneous 
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 HP:0001427 Mitochondrial inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the mitochondrial genome. Because the mitochondrial genome is almost always maternally inherited, a mitochondrial condition can only be transmitted by females, although the condition can affect both sexes. The proportion of mutant mitochondria can vary (heteroplasmy)." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001903 Anemia 
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 HP:0001994 Renal Fanconi syndrome 
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 HP:0002098 Respiratory distress 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002875 Exertional dyspnea 
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 HP:0003076 Glycosuria "The excretion of abnormal amounts of glucose in the urine, generally resulting in osmotic diuresis." [HPO:curators]
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 HP:0003109 Hyperphosphaturia "An increased excretion of phosphates in the urine." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003546 Exercise intolerance 
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 HP:0003688 Muscle biopsy shows decreased activity of cytochrome C oxidase 
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 HP:0006565 Liver biopsy shows increased lipid droplets 
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 HP:0012240 Increased intramyocellular lipid droplets "An abnormal increase in intracellular lipid droplets In a muscle. The number and size of these drops can increase with somd disorders of lipid metabolism affecting muscle. See pmid 20691590 for histological images." [HPO:probinson, pmid:20691590]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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