ENSG00000284194


Homo sapiens

Features
Gene ID: ENSG00000284194
  
Biological name :SCO2
  
Synonyms : SCO2 / SCO2, cytochrome c oxidase assembly protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q13.33
Gene start: 50523568
Gene end: 50526439
  
Corresponding Affymetrix probe sets: 204858_s_at (Human Genome U133 Plus 2.0 Array)   205241_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000444433
Ensembl peptide - ENSP00000491753
Ensembl peptide - ENSP00000491034
Ensembl peptide - ENSP00000444242
NCBI entrez gene - 9997     See in Manteia.
OMIM - 604272
RefSeq - NM_001169109
RefSeq - NM_001169110
RefSeq Peptide - NP_001162580
RefSeq Peptide - NP_001162581
swissprot - A0A1W2PQK0
swissprot - A0A1W2PP80
Ensembl - ENSG00000284194
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sco2ENSDARG00000045555Danio rerio
 Sco2ENSMUSG00000091780Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCO2 / O43819 / SCO2, cytochrome c oxidase assembly proteinENSG00000130489100
SCO1 / O75880 / SCO1, cytochrome c oxidase assembly proteinENSG0000013302839


Protein motifs (from Interpro)
Interpro ID Name
 IPR000053  Thymidine/pyrimidine-nucleoside phosphorylase
 IPR003782  Copper chaperone SCO1/SenC
 IPR013102  Pyrimidine nucleoside phosphorylase, C-terminal
 IPR013766  Thioredoxin domain
 IPR017276  Synthesis of cytochrome c oxidase, Sco1/Sco2
 IPR035902  Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily
 IPR036249  Thioredoxin-like superfamily
 IPR036566  Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006206 pyrimidine nucleobase metabolic process IEA
 biological_processGO:0006213 pyrimidine nucleoside metabolic process IEA
 biological_processGO:0006825 copper ion transport IEA
 biological_processGO:0006878 cellular copper ion homeostasis IEA
 biological_processGO:0008535 respiratory chain complex IV assembly IEA
 biological_processGO:0045454 cell redox homeostasis IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 molecular_functionGO:0004645 phosphorylase activity IEA
 molecular_functionGO:0005507 copper ion binding IEA
 molecular_functionGO:0016763 transferase activity, transferring pentosyl groups IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000545 Myopia 
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001522 Death in infancy 
Show

 HP:0001639 Hypertrophic cardiomyopathy 
Show

 HP:0002098 Respiratory distress 
Show

 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
Show

 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
Show

 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
Show

 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
Show

 HP:0003577 Onset at birth 
Show

 HP:0006999 Cell loss and gliosis in the basal ganglia 
Show

 HP:0007941 Limited extraocular movements 
Show

 HP:0008872 Feeding problems in infancy 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr