ENSG00000133302


Homo sapiens

Features
Gene ID: ENSG00000133302
  
Biological name :SLF1
  
Synonyms : Q9BQI6 / SLF1 / SMC5-SMC6 complex localization factor 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q15
Gene start: 94618347
Gene end: 94739436
  
Corresponding Affymetrix probe sets: 1558076_at (Human Genome U133 Plus 2.0 Array)   223542_at (Human Genome U133 Plus 2.0 Array)   230725_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430335
Ensembl peptide - ENSP00000265140
Ensembl peptide - ENSP00000424232
Ensembl peptide - ENSP00000425022
NCBI entrez gene - 84250     See in Manteia.
RefSeq - XM_017009984
RefSeq - XM_017009979
RefSeq - XM_017009980
RefSeq - XM_017009981
RefSeq - XM_017009982
RefSeq - NM_032290
RefSeq - XM_017009978
RefSeq Peptide - NP_115666
swissprot - H0YBU1
swissprot - D6RED9
swissprot - Q9BQI6
Ensembl - ENSG00000133302
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slf1ENSDARG00000102118Danio rerio
 ENSGALG00000027932Gallus gallus
 Slf1ENSMUSG00000021597Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8N7Z5 / ANKRD31 / ankyrin repeat domain 31ENSG0000014570016
BCOR / Q6W2J9 / BCL6 corepressorENSG0000018333713
BARD1 / Q99728 / BRCA1 associated RING domain 1ENSG0000013837612
TONSL / Q96HA7 / tonsoku like, DNA repair proteinENSG0000016094911
BCORL1 / Q5H9F3 / BCL6 corepressor like 1ENSG0000008518510
Q6UB99 / ANKRD11 / ankyrin repeat domain 11ENSG000001675229
Q6UB98 / ANKRD12 / ankyrin repeat domain 12ENSG000001017458


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR002110  Ankyrin repeat
 IPR020683  Ankyrin repeat-containing domain
 IPR036420  BRCT domain superfamily
 IPR036770  Ankyrin repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0031334 positive regulation of protein complex assembly IMP
 biological_processGO:0034184 positive regulation of maintenance of mitotic sister chromatid cohesion IMP
 biological_processGO:1990166 protein localization to site of double-strand break IDA
 biological_processGO:2000781 positive regulation of double-strand break repair IDA
 cellular_componentGO:0000786 nucleosome ISS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005813 centrosome ISS
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0035861 site of double-strand break IDA
 cellular_componentGO:0042405 nuclear inclusion body ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0044877 protein-containing complex binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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